https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=21946 Author: Jason Lucas/Gilberto Fragoso Sign off Date Role CBIIT or Stakeholder Organization The purpose of this document is to collect, analyze, and define high-level needs and features of the National Cancer Institute Center for Biomedical Informatics and Information Technology (NCI CBIIT) Protege Release 1.4.2. This document focuses on the functionalities proposed by the product stakeholders and target users in order to make it a better product. The use-case and supplementary specifications document will detail how the framework will fulfill these needs. The objective of this release of Protege 1.4.2 is to provide bugs fixes found in previous Protege releases as well as validating functionality that had been developed in previous releases but never tested. Then fixing any defects that come out of that testing.
Protege 1.4.1.1 is currently in production.
GForge number Brief description of item (Approved or Proposed) GForge number Brief description of item (Approved or Proposed) GForge number Brief description of item (Approved or Proposed) Duplicate Full Syn atom could not be deleted via NCI Editor Tab unable to find concept update protege/workflow and SWM to handle new XML Literal complex properties Legacy_Concept_Name should not transfer during merge Legacy_Concept_Name is ReadOnly but will be replicated in copy/split actions Conversion of windows characters to valid unicode Cannot change case of PT and PN Strange behavior on Preferred Name change Prompt - accept and reject icons in 'changed by' panel of 'table' view don't work SPCA contrib source properties set to protege:readOnly=true are still editable identificable ? Properties that have spaces cannot be edited in the Edit tab PROMPT Tree View reject gave null pointer exception Incorrect unretire functionality Lucene query tab default setting will not search PATO Allow multiple domains and ranges "Increase or Decrease Font Size" causes Edit Tab increment Search using contains is very slow Automated configuration of server project Remove hard-coding of LONG_DEFINITION and other deprecated complex properties Tool Tab compression and disappearance Protege incorrectly exporting names with quotes GForge number Brief description of item (Approved or Proposed) This section describes in detail all the related activities which must be performed for this release but do not add functionality. These activities are included in the scope and project plan due to level of effort or relative importance to the overall success of delivery of the release. GForge number (hyperlinked) Brief description of general support activity Iteration Example, "Level 2 Support, integration of help and training to the user community." Customer Name Role Interest/Need NCI CBIIT EVS Content Editorial Team EVS Content Management Primary Users of Protege. Utilize Protege to edit EVS content CBIIT Staff/Contractor Name Role Responsibilities George Komatsoulis NCI CBIIT Oversees NCI CBIIT Application Infrastructure Avinash Shanbhag Director of CORE Engineering Oversees NCICB caCORE Software Engineering Frank Hartel EVS Product Manager Directs EVS Projects Sherri de Coronado Contract Project Officer Management/technical resource from Bioinformatics vertica. Contract management, coordinateion, testing, documentation Gilberto Fragoso Government Lead Technical resource from Bioinformatics vertical This product uses the following technical components which have been derived from the current NCICB Technology Stack. Client Application The Protege client is java based and provides a complete editing environment for Protege databases, call ontologies. It uses the same plugin architecture to support extensions, called Tabs. For example, the NCI Edit Tab, Workflow, Changes, and Prompt, are examples of plugin tabs. Application Server None Database Server MySQL Operating System Any that supports Java: Windows XP, Linux, OS X <ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="170d182e-8550-489b-851c-7fe346ed304e"><ac:plain-text-body><![CDATA[ [caCORE:Other] Portable ANSI-SQL compliant relational schemas ]]></ac:plain-text-body></ac:structured-macro> This release is dependent on the caCORE components or products documented in the CORE Product Dependency Matrix. [Provide additional explanation as applicable. For example, "The EVS vocabulary systems are used by the Java client to retrieve and validate concept information for naming and defining meanings."] Items that are out of scope were evaluated as part of the initial scoping activities for this release, and subsequently not included in the final approved scope. These items are also documented in the cumulative backlog of requirements found on the product GForge site. They include out-of-scope functional requirements (enhancements or new features), bug fixes, non-functional requirements, and general support activities. GForge number (hyperlinked) Brief description of item moved from the in-scope section Iteration during which the item Document Version: Click the Info tab. View the Recent Changes or click the link to view the page history. Last Modified: Refer to the first line displayed in the document window. <ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cced3e12-220e-4bd4-8259-a6d8fcf35af8"><ac:plain-text-body><![CDATA[ Project GForge site: [Project GForge site link] ]]></ac:plain-text-body></ac:structured-macro> Most current version: Unless the display includes a notice that you are viewing a previous version, you are viewing the most current version of this Scope Document for the release indicated in the title. Revision history: Click the Info tab. In the Recent Changes area, click the link to view the page history. Review history: Click the Info tab. In the Recent Changes area, note the developer who made each change and the date and time. Refer to the Key People Directory for their roles. Click the link to view any page or to view the page history, and then click the link for a page. When the page opens, view the comments and changes made in that version. <ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bed6ea8e-79a7-491b-aef1-927efa841741"><ac:plain-text-body><![CDATA[ Related documents: [Name and URL of each related document] ]]></ac:plain-text-body></ac:structured-macro> CBIIT Management Role Responsibilities Frank Hartel Product Manager Oversees development of the product: features, functions, definition of stakeholders, priorities within the scope, timeframe for release Avinash Shanbhag Engineering Manager Oversees NCICB caCORE software engineering practices, conducts design reviews, guides technical development Denise Warzel Product Line Manager Oversees NCICB caCORE product line. Responsible for overall product integration, major and minor release cycles. Supports Product Manager.
Email: lucasjr@mail.nih.gov
Team: EVS
Contract: [Contract number]
Client: NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services
Vision and Needs
Current Solution
Iteration 1
Feature Requests
(hyperlinked)
Bug Fixes
(hyperlinked)
Validation Tasks (Fixed in Previous Release but not Tested)
(hyperlinked)
Iteration 2
Validation Tasks (Development from Previous Releases but not Tested)
(hyperlinked)
General Support Activities
(Approved or Proposed)
Stakeholder Summary
Technical Environment
Java 1.5.x
Product Dependencies
Out of Scope Items
with brief explanation added of why it was not included in this release
was removed from in-scope
Document History
Project Information
Document Information
Contents