Held: May 15/16 2018
Two pre-workshop webinars are being held to provide background information about the NCI CRDC and semantic resources, as well as Use cases for the CRDC.
- Tuesday April 24 1-2:30 pm– Pre-Workshop Webinar: Cancer Research Data Commons and Semantic Resources:
- Powerpoint presentations . See Attachments to this page (paperclip icon upper left, or ... icon upper right)•Overview of Cancer Moonshot and Cancer Research Data Commons – Tanja Davidsen•Cancer Data Aggregator - goals/requirements – Todd Pihl•GDC – Overview of model/querying/pain points – Mark Jensen•Overview of NCI Semantic Resources•Enterprise Vocabulary Services (EVS) – Margaret Haber•Structured Metadata Resources (caDSR and MDR plans) – Denise Warzel•CDISC Standards Overview – Bron Kisler•Semantics of Monarch Overview – Chris Mungall
- Recorded Webinar (as an MP4) file - (You can run the recording by clicking on the attachment)
- Cheat Sheet of acronyms
- Powerpoint presentations . See Attachments to this page (paperclip icon upper left, or ... icon upper right)
- Tuesday May 8 1-2:30 pm – Pre-Workshop Webinar: Representative Use Cases for the CRDC
- Powerpoint presentations See Attachments to this page (paperclip icon upper left, or ... icon upper right)•HTAN – Human Tumor Atlas Network - driving project for Cancer Data Aggregator – Sean Hanlon•PDC - Protein Data Commons / CPTAC – Ratna Thangudu•CIDC - Cancer Immunologic Data Commons – David Patton•SEER - Surveillance data linkage and discovery – Paul FearnBroadening Genomic Data Storage - diversity of data types – Ian Fore
- Recorded Webinar (as an MP4) file
- Powerpoint presentations See Attachments to this page (paperclip icon upper left, or ... icon upper right)
The Workshop was held on May 15/16. Many thanks to those who participated, and special thanks to the speakers and facilitators! We are happy to be able to continue engaging with participants and the community in the next steps.
- Agenda: Facilitators - Melissa Haendel and Bron Kisler (See Attachments to this page)
- Presentations from Day 1 of Workshop: (These have been loaded as attachments to this page)
Pediatric Cancer Data Commons – Sam Volchenboum
APOLLO: A High Profile Use Case with Unique Challenges for the CRDC – Kathleen Darcy
Project GENIE and other relevant SAGE Activities: James Eddy/Sara Gosline
NCIt OBO Edition and its Use in Phenotype/Genotype Efforts across Non-Cancer and Cancer Diseases – Jim Balhoff
- Modeling Landscape Analysis, Bron Kisler
Raw Notes from the workshop are on the shared Google folder: bit.ly/nci_semantics
Summary materials and outputs from the workshop will be sent to attendees, and our thanks to a number of attendees agreeing to continue working with us on Recommendations, Queries to feed into Requirements, and a possible White Paper.