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Downloading the Downloader App

Get the Downloader app

Click one of the following links to download the NBIA Downloader for that operating system.

  • Windows
  • Mac
  • RPM (tested on CentOS)
    To run this file, type the following at the command prompt:
    sudo yum install Downloader-3.0-1.x86_64.rpm
  • DEB (tested on Ubuntu)
    To run this file, type the following at the command prompt:
    sudo dpkg -i downloader_3.0-2_amd64.deb

After you search for images of interest and add them to your data basket, you can download them.

The most convenient method of downloading is by using the Downloader. You must install the Downloader before you begin downloading. You only have to install it once to use it in future downloading sessions.

Consult the Downloader App FAQ for more information about Downloader app versions and usage.

If you cannot install the Downloader app for any reason, you can run the Temporary Downloader (JNLP) instead.

Installing the Downloader App

To install the Downloader app on Windows or Mac

  1. Download the installer package for Windows or Mac using the links above.
  2. Save the installer package file to your computer.
  3. Install the app by double-clicking the installer package file.
  4. Agree to the terms in the License Agreement and click Install.
  5. When the Setup Wizard ends, click Finish.

To install the Downloader app on Linux (centOS or Ubuntu)

You must have the sudo privilege on your computer and a sudo password to install the  Downloader app on CentOS and Ubuntu.

  1. Download the installer package for centOS or Ubuntu using the links above.
  2. Save the installer package file to your computer.
  3. Open a command window and go to the location where you saved the installer.
    • For a centOS system, enter the following at the command prompt:
      sudo yum -v -y remove TCIADownloader.x86_64;sudo yum -y install TCIADownloader-2.0-1.x86_64.rpm
    • For a Ubuntu system, enter the following at the command prompt:
      sudo -S dpkg -r TCIADownloader.x86_64;sudo -S dpkg -i TCIADownloader-2.0-2.x86_64.deb
      Enter the sudo password when prompted.

Downloading Images Using the Downloader App

When you start downloading the images you have added to the data basket, NBIA provides a list of those images in a manifest file (manifest-xxx.tcia). You must have already installed the Downloader app to open this manifest file and download the images.

  1. Search for images of interest.
  2. Add those images to your data basket.
  3. Open the My Data Basket page and click Start Download.
  4. Click the manifest-xxx.tcia file.
    If you are only downloading public images, the Downloader appears, listing the items in your data basket. If you are downloading any private images, see the note about downloading private data.
    TCIA Downloader with a collection in it to download

    The Downloader app lists all items you selected in the data basket. You can hover your mouse over the Patient ID, Study Instance, and Series Instance columns to reveal the complete corresponding IDs. You can also resize a column by selecting and dragging the column border.

    If you do not want to download any of those items, select them in the Downloads table and then click Delete. When you remove an item from the Downloads table, it stays in your data basket.

  5. Click Browse to navigate to the destination where you want the images/annotations to be downloaded.

  6. Click Start to begin the download. You can monitor the download in the Progress column. The Status column indicates when the download for each item is complete.

    At any point in the process, you can click the Pause and Resume buttons to temporarily stop and restart the process.

    Note that files downloaded this way are not compressed. The downloaded files are stored in a child folder under the destination folder such as Collection Name > Patient ID > part of Study Date + part of Study ID + part of Study Description + last 5 digits of Study Instance UID > part of Series Number + part of Series Description + last 5 digits of Series Instance UID.

    Network Error?

    If network errors occur during large downloads, Download Manager retries the files the number of times that your administrator has configured.

A Note about Downloading Private Data

If you are downloading any private data, you are prompted to log in.
TCIA Downloader log in window

 Once you log in, the Downloader appears.

If you do not have permission to access even one of the collections/sites to which the images you have in your manifest file, you are prompted to contact the help desk to request permission to access all of the images.
TCIA Downloader contact the help desk to request permission to access all of the images

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