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Date

Attendees

Agenda

  • Data release
    • Release of LUAD Acetylome data to coincide with the publication of the two major LUAD studies from CPTAC and Academia Sinica in Cell (July 9)
    • Publication details added to Lung cancer studies from CPTAC3 and Academia Sinica (July 13) 
  • Updates on Scientific committee, next steps
  • CPTAC data portal migration discussion  
  • Next dataset release priorities
    • CPTAC3 UCEC Acetylome - ongoing
    • CPTAC3 Lung Squamous Cell Carcinoma (LSCC) - proteome, phosphoproteome, acetylome - waiting for data from DCC 
  • Ongoing work (previous and ongoing sprints) - 

- Release acetylome datasets, bug fixes

- Released a data submission template as a spreadsheet workbook

- search bar improvements - text annotation, ordering of results, etc

- release of a data submission template as a spreadsheet workbook

- worked on ability to reuse the previously released biospecimens for new studies

- reorganizing heatmap files, API updates to use the new PDC study identifier (e.g. PDC000nnn)

  • Workspace feature enhancements include -

- ability to load annotations during file upload that will help in streamline study creation,

- ability to accept data_source (submiiter or PDC) and embargo_date  

- file-set validation based on instrument specific file formats , e.g. Sciex models,

- adding support for Acetylome, etc 
- Other minor improvements

  • External interactions
    • MSFragger webinar - mention of PDC - SBG integration 
    • SBG talk at next bi weekly call 
  • Other items

Discussion items

TimeItemWhoNotes



LUAD Acetylome data released last week and supports two publications, one of which uses the new IDs for PDC.



Scientific Committee: haven't heard from 2 people, but Mike MacCoss has reached out and internal discussions were held on how to organize the call.  Proposing 1.5-2 hr. call. Topics: Data hosting, development efforts, findability, APIs.  Short 15 presentations with ~10 min of time for feedback.  Looking for feedback on agenda.  Paul Rudnick volunteers to do section on CDAP output/APIs.   Doodle poll to be sent out for times - targeting early to mid August.



CPTAC data portal migration: discuss where we stand and what steps are needed to make the migration happen.  Same presentation as on Monday.

Action items

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