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Date

Attendees

NameAttended
Jayashree Kalpathy-CramerYes
Ulli WagnerYes
Carolyn KlingerYes
Benjamin BearceYes


Currently supported challenges

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release Validation dataRelease
Test data		Number of
Participants		Closing DateWill the challenge remain open?Comments











Tasks / Deliverables


TaskDue DateDeliverableStatus

Supporting at least three challenges including one federated learning challenge

8/30/2022


Support organizers and participants (help desk, FAQ, training, presentations)

8/30/2022




Maintain and update the website8/30/2022


Capturing and providing metrics on the use of the MedICI website

8/30/2022


Capturing and providing metrics on the challenges

8/30/2022


Investigate the use of MedICI for federated learning challenges

 

Report

https://docs.google.com/document/d/1v7Mz-diz8wSXzpdrGOGXwaDnZAOZ2t879frgTvzyt24/edit#heading=h.tqyuzeebfeoq

  • need to understand what is meant by "federated learning"
  • review report
  • have a discussion with Keyvan
  • determine if MedICI is suited for support of federated challenges
  • if yes, what needs to be done to make it suitable
  • find time for discussion during the week of November 15

Investigate the integration of MedICI with Kheops

 

Report

Presentation: NCI Imaging Informatics Webinar

The recordings are towards the bottom of the page.

URL: https://kheops.online/

Draft: https://docs.google.com/document/d/1c20ny4UNWw4BTXhdFPmc3o0YG00toOndbklXhc40Rqc/edit

The report was finalized on  


Support the deployment of MedICI in NCI cloud environments8/30/2021

App scan found vulnerabilities, Ben fixed them, app needs to be tested with test cases that are provided by Codalab, Ben needs to familiarize himself with the test suite. Codalab needs to be app scanned again.

Codalab can connect to various storage places: Azure, AWS, GCP

2021/04/15 - NCI is hardening security which makes deployment much harder. NCI VMs are not allowed to talk to cloud environments. Kevin is investigating workarounds. The goal is to run an app scan. 

Keyvan suggested trying a Codalab deployment on Google cloud outside of the NCI network. Keyvan will investigate.



Discussion items


TimeItemWhoNotes

Notes 


Action items




Upcoming challenges
  • COVID challenge (Randy Gollub, Jayashree Kalpathy-Cramer)

Information sharing


Monthly status reports
add Monday NCI cloud email to the monthly status report

NCI MedICI installation
CodaLab on AWS, Codalab's older version is still working, and some developers check-in code. The newer version (Python 3) had the last commit in August 2020. Deploying on a different cloud platform (AWS) and within the NCI environment is difficult. 

Contract / invoice status / SOW
  • Authorization to Proceed was issued, covers the month of September
  • Contract mod will follow
  • Invoice ending 8/30/2020 - in progress
  • Invoice 8/31/2020
  • Cost proposal for the new contract year: FNLCR will request a modification to the cost proposal -  Done.



PIV card / GFE laptop / VPN

VPN access


Paper
The draft will be submitted by September 15, 2020. - Not received

Videos
  • Hold the work on the video for now

Strategy meeting
  • review paper
  • open challenges back up (contract / funding)
  • website

Action items


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