Highlights of caArray 2.4.0.2 released on 2/17/2011
- The 2.4.0.2 release (caArray 2.4.0.2 Release Note) addresses the following issues with the 2.4.0 release:
- Fixes an error which causes copy number data to not parse.
- Addresses issues recently found with 2.4.0 installers.
Highlights of caArray 2.4.0.1 released on 1/6/2011
- The 2.4.0.1 release addresses the following issues with the 2.4.0 release:
- Fixes occasional out-of-memory errors with the parsers.
- Addresses null pointer exception in the upgrade installer.
- Adds probe name validation to the data file parsers.
- Adds a security patch to Struts 2.1.x.
- Correctly validates Genepix GAL array designs with non-integer block header information.
Highlights of caArray 2.4.0 released on 9/21/2010
- This release represents a feature release of the caArray 2 software. Highlights of caArray 2.4.0 are:
- Agilent raw TXT for aCGH, expression and miRNA assays
- Agilent GEML/XML array designs
- Nimblegen pair Report TXT (raw and normalized)
- Nimblegen NDF array designs
- Illumina Sample Probe Profile TXT
- Illumina genotyping processed data matrix TXT
- Illumina BGX/TXT array designs
- Affymetrix CEL and CHP in AGCC/Calvin formats in addition to the GCOS formats
- Affymetrix CNCHP copy number data (CN4 and CN5)
- Copy Number data in a prescribed MAGE-TAB Data Matrix format.
- If you have copy number data that is not in the caArray-prescribed Copy Number MAGE-TAB Data Matrix format, we provide a conversion utility. The conversion utility is found inside the cn2magetab.jar file, and is invoked from the command line. Please see the README_copy_number_conversion.txt for more details on its operation.
