WIP Table Check Completeness LexEVS 5.0 Loader Mapping Guide

Contents of this Page

Introduction to this Guide

MAYO CLINIC DIVISION OF BIOMEDICAL INFORMATICS
LexGrid Ontology Loader Mapping
LexGrid Vocabulary Services for caBIG (LexBIG)
Authors: Scott Bauer, Craig Stancl

Revision History

Version Number	Revision Date	Author	Summary of Changes
1.0	None	Scott Bauer, Craig Stancl	Initial Draft for LexEVS v5.0
1.1	Nov 29, 2009	Marylyn King (NCI)	Updated related documents note regarding LexEVS v5.1

OWL Mapping - 4.2.1

OWL Mapping - Protégé (4.2.1)

OWL Element	LexGrid	Comments
OWL: RDF Schema Features	LexGrid	Comments
owl:ontology	codingScheme	No comments
xml:lang	codingScheme.defaultLanguage	Default is 'en'
dc:title	codingScheme.formalName	No comments
rdfs:label	codingScheme.localName	No comments
URI	codingScheme.registeredName	No comments
owl:versionInfo	codingScheme.representsVersion	Default is 'UNASSIGNED'
dc:rights	codingScheme.copyright	No comments
owl:Class (Thing, Nothing)	concept	No comments
rdf:ID	concept.conceptCode	No comments
rdf:ID	concept.isActive	Hard coded as "Active"
rdf:ID	concept.isAnonymous	No comments
rsfs:label	concept.entityDescription	No comments
rdf:comment	concept.comment	No comments
rdfs:subClassOf	association	No comments
rdfs:subClassOf	association.id = "subClassOf"	No comments
rdfs:subClassOf	association.forwardName = "subClassOf"	No comments
rdfs:subClassOf	association.isFunctional = "false"	No comments
rdfs:subClassOf	association.isNavigable = "true"	No comments
rdfs:subClassOf	association.isReflexive="true"	No comments
rdfs:subClassOf	association.isSymmetric="false"	No comments
rdfs:subClassOf	association.isTransitive="true"	No comments
rdf:Property (ObjectProperty)	association	An association between two classes (hasDomain, hasRange)
rdf:Property (DatatypeProperty)	association concept.conceptProperty	An association between one class (domain) and one asscoication (hasDomain and hasDataProperty). The conceptProperty defines the range.
rdfs:subPropertyOf	association	No comments
rdfs:subPropertyOf	association.id = "subPropertyOf"	No comments
rdfs:subPropertyOf	association.forwardName = "subPropertyOf"	No comments
rdfs:subPropertyOf	association.isFunctional = "false"	No comments
rdfs:subPropertyOf	association.isNavigable = "true"	No comments
rdfs:subPropertyOf	association.isReflexive="true"	No comments
rdfs:subPropertyOf	association.isSymmetric="false"	No comments
rdfs:subPropertyOf	association.isTransitive="true"	No comments
rdfs:domain	association	No comments
rdfs:domain	association.id = "hasDomain"	No comments
rdfs:domain	association.forwardName = "hasDomain"	No comments
rdfs:domain	association.isNavigable = "true"	No comments
rdfs:domain	association.isReflexive="true"	No comments
rdfs:domain	association.isSymmetric="false"	No comments
rdfs:domain	association.isTransitive="true"	No comments
rdfs:range	association	No comments
rdfs:range	association.id = "hasRange"	No comments
rdfs:range	association.forwardName = "hasRange"	No comments
rdfs:range	association.isNavigable = "true"	No comments
rdfs:range	association.isReflexive="false"	No comments
rdfs:range	association.isSymmetric="false"	No comments
rdfs:range	association.isTransitive="false"	No comments
Individual	association	A 'hasInstance' association is created. (ie. sourceId = Country, targetId = America)
Individual	association.id = "hasInstance"	No comments
OWL (In)Equality	LexGrid	Comment
owl:equivalentClass	association	No comments
owl:equivalentClass	association.id = "equivalentClass"	No comments
owl:equivalentClass	association.forwardName = "equivalentClass"	No comments
owl:equivalentClass	association.isFunctional = "false"	No comments
owl:equivalentClass	association.isNavigable = "true"	No comments
owl:equivalentClass	association.isReflexive="true"	No comments
owl:equivalentClass	association.isSymmetric="true"	No comments
owl:equivalentClass	association.isTransitive="true"	No comments
owl:equivalentClass	association.reverseName="equivalentClass"	No comments
owl:equivalentProperty	association	No comments
owl:equivalentProperty	association.id = "equivalentProperty"	No comments
owl:equivalentProperty	association.forwardName = "equivalentProperty"	No comments
owl:equivalentProperty	association.isFunctional = "false"	No comments
owl:equivalentProperty	association.isNavigable = "true"	No comments
owl:equivalentProperty	association.isReflexive="true"	No comments
owl:equivalentProperty	association.isSymmetric="true"	No comments
owl:equivalentProperty	association.isTransitive="true"	No comments
owl:equivalentProperty	association.reverseName="equivalentProperty"	No comments
owl:sameAs	association	No comments
owl:sameAs	association.id = "sameAs"	No comments
owl:sameAs	association.forwardName = "sameAs"	No comments
owl:sameAs	association.isFunctional = "false"	No comments
owl:sameAs	association.isNavigable = "true"	No comments
owl:sameAs	association.isReflexive="true"	No comments
owl:sameAs	association.isSymmetric="true"	No comments
owl:sameAs	association.isTransitive="true"	No comments
owl:sameAs	association.reverseName="sameAs"	No comments
differentFrom	association	No comments
differentFrom	association.id = "differentFrom"	No comments
differentFrom	association.forwardName = "differentFrom"	No comments
differentFrom	association.isFunctional = "false"	No comments
differentFrom	association.isNavigable = "true"	No comments
differentFrom	association.isReflexive="true"	No comments
differentFrom	association.isSymmetric="true"	No comments
differentFrom	association.isTransitive="true"	No comments
differentFrom	association.reverseName= "differentFrom"	No comments
owl:AllDifferent	association	No comments
owl:AllDifferent	association.id = "AllDifferent"	No comments
owl:AllDifferent	association.forwardName = "AllDifferent"	No comments
owl:AllDifferent	association.isFunctional = "false"	No comments
owl:AllDifferent	association.isNavigable = "true"	No comments
owl:AllDifferent	association.isReflexive="true"	No comments
owl:AllDifferent	association.isSymmetric="true"	No comments
owl:AllDifferent	association.isTransitive="true"	No comments
owl:AllDifferent	association.reverseName= "AllDifferent"	No comments
OWL: Property Characteristics	LexGrid	Comments
owl:inverseOf	association	No comments
owl:inverseOf	association.id = "inverseOf"	No comments
owl:inverseOf	association.forwardName = "inverseOf"	No comments
owl:inverseOf	association.isFunctional = "false"	No comments
owl:inverseOf	association.isNavigable = "true"	No comments
owl:inverseOf	association.isReflexive="true"	No comments
owl:inverseOf	association.isSymmetric="true"	No comments
owl:inverseOf	association.isTransitive="true"	No comments
owl:inverseOf	association.reverseName="inverseOf"	No comments
owl:TransitiveProperty	association.isTransitive	association property 'isTransitive'
owl:SymmetricProperty	association.isSymmetric	association property 'isSymmetric'
owl:InverseFunctionalProperty	association.isReverseFunctional	association property 'isReverseFunctional'
owl:FunctionalProperty	association.isFunctional	association property 'isFunctional'
OWL: Property Restrictions	LexGrid	Comments
owl:Restriction	concept	Create an anonymous concept for the restriction
owl:Restriction	concept.id	System generated
owl:Restriction	concept.isActive = true	No comments
owl:Restriction	concept.isAnonymous = true	Hardcoded "True"
owl:onProperty	association.id	No comments
owl: allValuesFrom	concept.entityDescription	String of allValuesFrom values
owl: allValuesFrom	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl: allValuesFrom	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl: allValuesFrom	concept.presentation.isPreferred = true	Hardcoded "true"
owl: allValuesFrom	concept.presentation.text	String of allValuesFrom values
owl: allValuesFrom	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl: allValuesFrom	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl: allValuesFrom	concept.conceptProperty.text = "owl:unionOf"	No comments
owl: someValuesFrom	concept.entityDescription	String of someValuesFrom values
owl: someValuesFrom	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl: someValuesFrom	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl: someValuesFrom	concept.presentation.isPreferred = true	Hardcoded "true"
owl: someValuesFrom	concept.presentation.text	String of someValuesFrom values
owl: someValuesFrom	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl: someValuesFrom	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl: someValuesFrom	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:intersectionOf	concept.entityDescription	String of intersectionOf values (ie. Pizza and not VegetarianPizza)
owl:intersectionOf	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl:intersectionOf	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl:intersectionOf	concept.presentation.isPreferred = true	Hardcoded "true"
owl:intersectionOf	concept.presentation.text	String of intersectionOf values (ie. Pizza and not VegetarianPizza)
owl:intersectionOf	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl:intersectionOf	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl:intersectionOf	concept.conceptProperty.text = "owl:intersectionOf"	No comments
UnionOf	concept.conceptProperty.text = "owl:unionOf"	No comments
owl:complementOf	association	association.id = "subClassOf"
owl:oneOf	concept.entityDescription	String of oneOf values
owl:oneOf	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl:oneOf	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl:oneOf	concept.presentation.isPreferred = true	Hardcoded "true"
owl:oneOf	concept.presentation.text	String of oneOf values
owl:oneOf	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl:oneOf	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl:oneOf	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:hasValue	associationQualification.nameAndValueList.content	No comments
owl:minCardinality	concept.entityDescription	String of minCardinality Values (ie. (hasTopping min 3) and Pizza)
owl:minCardinality	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl:minCardinality	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl:minCardinality	concept.presentation.isPreferred = true	Hardcoded "true"
owl:minCardinality	concept.presentation.text	String of minCardinality Value (ie. (hasTopping min 3) and Pizza)
owl:minCardinality	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl:minCardinality	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl:minCardinality	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:maxCardinality	concept.entityDescription	String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)
owl:maxCardinality	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl:maxCardinality	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl:maxCardinality	concept.presentation.isPreferred = true	Hardcoded "true"
owl:maxCardinality	concept.presentation.text	String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)
owl:maxCardinality	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl:maxCardinality	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl:maxCardinality	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:cardinality	concept.entityDescription	String of cardinality Values
owl:cardinality	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
owl:cardinality	concept.presentation.propertyName	Hardcoded "textualPresentation"
owl:cardinality	concept.presentation.isPreferred = true	Hardcoded "true"
owl:cardinality	concept.presentation.text	String of cardinality Values
owl:cardinality	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
owl:cardinality	concept.conceptProperty.propertyName = type	Hardcoded "type"
owl:cardinality	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:disjointWith	association	association.id = "disjointWith"
OWL: Annotation Property	LexGrid	Comments
rdfs:label	Presentation	No comments
rdfs:label	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
rdfs:label	concept.presentation.propertyName = "textualPresentation"	Hardcoded "textualPresentation"
rdfs:label	concept.presentation.isPreferred = true	Hardcoded "true"
rdfs:label	concept.presentation.text	Value of rdfs:label
rdfs:comment	Comment	No comments
rdfs:comment	concept.comment.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
rdfs:comment	concept.comment.propertyName = "comment"	Hardcoded "comment"
rdfs:comment	concept.presentation.text	Value of rdfs:comment
rdfs:seeAlso	conceptProperty	No comments
rdfs:isDefinedBy	conceptProperty	No comments
OWL: Versioning	LexGrid	Comments
owl:versionInfo	codingScheme.representsVersion	No comments
priorVersion	Not Mapped	No comments
backwardCompatibleWith	Not Mapped	No comments
owl:incompatibleWith	association	No comments
owl:incompatibleWith	association.id = "incompatibleWith"	No comments
owl:incompatibleWith	association.forwardName = "incompatibleWith"	No comments
owl:incompatibleWith	association.isFunctional = "false"	No comments
owl:incompatibleWith	association.isNavigable = "true"	No comments
owl:incompatibleWith	association.isReflexive="true"	No comments
owl:incompatibleWith	association.isSymmetric="true"	No comments
owl:incompatibleWith	association.isTransitive="true"	No comments
owl:incompatibleWith	association.reverseName="incompatibleWith"	No comments
DeprecatedClass	Concept attribute setIsActive = false	Not Mapped
DeprecatedProperty	—	Not Mapped

OWL Mapping - 5.0

OWL Mapping - Protégé (5.0)

OWL Element	LexEVS	Comments
OWL: RDF Schema Features	LexEVS	Comments
owl:ontology	codingScheme	No comments
xml:lang	codingScheme.defaultLanguage	Default is 'en'
dc:title	codingScheme.formalName	No comments
rdfs:label	codingScheme.localName	No comments
URI	codingScheme.registeredName	No comments
owl:versionInfo	codingScheme.representsVersion	Default is 'UNASSIGNED'
dc:rights	codingScheme.copyright	No comments
owl:Class (Thing, Nothing)	concept	No comments
rdf:ID	concept.conceptCode	No comments
–	concept.isActive	Hard coded as "Active"
–	concept.isAnonymous	No comments
–	concept.isDefined	No comments
rsfs:label	concept.entityDescription	No comments
rdf:comment	concept.comment	No comments
rdfs:subClassOf	association	No comments
–	association.id = "subClassOf"	No comments
–	association.forwardName = "subClassOf"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="false"	No comments
–	association.isTransitive="true"	No comments
rdf:Property (ObjectProperty)	association	An association between two classes (domain, range)
rdf:Property (DatatypeProperty)	association concept.conceptProperty	An association between one class (domain) and one asscoication (domain and hasDataProperty). The conceptProperty defines the range.
rdfs:subPropertyOf	association	No comments
–	association.id = "subPropertyOf"	No comments
–	association.forwardName = "subPropertyOf"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="false"	No comments
–	association.isTransitive="true"	No comments
rdfs:domain	association	No comments
–	association.id = "domain"	No comments
–	association.forwardName = "domain"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="false"	No comments
–	association.isSymmetric="false"	No comments
–	association.isTransitive="true"	No comments
rdfs:range	association	No comments
–	association.id = "range"	No comments
–	association.forwardName = "range"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="false"	No comments
–	association.isSymmetric="false"	No comments
–	association.isTransitive="false"	No comments
Individual	association	An 'instance' association is created. (ie. sourceId = Country, targetId = America)
–	association.id = "instance"	No comments
OWL (In)Equality	LexEVS	Comments
owl:equivalentClass	association	No comments
–	association.id = "equivalentClass"	No comments
–	association.forwardName = "equivalentClass"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName="equivalentClass"	No comments
owl:equivalentProperty	association	No comments
–	association.id = "equivalentProperty"	No comments
–	association.forwardName = "equivalentProperty"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName="equivalentProperty"	No comments
owl:sameAs	association	No comments
–	association.id = "sameAs"	No comments
–	association.forwardName = "sameAs"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName="sameAs"	No comments
differentFrom	association	No comments
–	association.id = "differentFrom"	No comments
–	association.forwardName = "differentFrom"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName= "differentFrom"	No comments
owl:AllDifferent	association	No comments
–	association.id = "AllDifferent"	No comments
–	association.forwardName = "AllDifferent"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName= "AllDifferent"	No comments
OWL: Property Characteristics	LexEVS	Comments
owl:inverseOf	association	No comments
–	association.id = "inverseOf"	No comments
–	association.forwardName = "inverseOf"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName="inverseOf"	No comments
owl:TransitiveProperty	association.isTransitive	association property 'isTransitive'
owl:SymmetricProperty	association.isSymmetric	association property 'isSymmetric'
owl:InverseFunctionalProperty	association.isReverseFunctional	association property 'isReverseFunctional'
owl:FunctionalProperty	association.isFunctional	association property 'isFunctional'
OWL: Property Restrictions		Comments
owl:Restriction	concept	Create an anonymous concept for the restriction
–	concept.id	System generated	–
–	concept.isActive = true	No comments
–	concept.isAnonymous = true	Hardcoded "True"
owl:onProperty	association.id	No comments
owl: allValuesFrom	concept.entityDescription	String of allValuesFrom values
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of allValuesFrom values
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:unionOf"	No comments
owl: someValuesFrom	concept.entityDescription	String of someValuesFrom values
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of someValuesFrom values
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:intersectionOf	concept.entityDescription	String of intersectionOf values (ie. Pizza and not VegetarianPizza)
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of intersectionOf values (ie. Pizza and not VegetarianPizza)
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
UnionOf	concept.conceptProperty.text = "owl:unionOf"	No comments
owl:complementOf	association	association.id = "subClassOf"
owl:oneOf	concept.entityDescription	String of oneOf values
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of oneOf values
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:hasValue	associationQualification.nameAndValueList.content	No comments
owl:minCardinality	concept.entityDescription	String of minCardinality Values (ie. (hasTopping min 3) and Pizza)
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of minCardinality Value (ie. (hasTopping min 3) and Pizza)
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:maxCardinality	concept.entityDescription	String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of maxCardinality Values (ie. (hasTopping max 2) and Pizza)
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:cardinality	concept.entityDescription	String of cardinality Values
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	String of cardinality Values
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:disjointWith	association	association.id = "disjointWith"
OWL: Annotation Property	LexEVS	Comments
rdfs:label	Presentation	No comments
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName = "textualPresentation"	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	Value of rdfs:label
rdfs:comment	Comment	No comments
–	concept.comment.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.comment.propertyName = "comment"	Hardcoded "comment"
–	concept.presentation.text	Value of rdfs:comment
rdfs:seeAlso	conceptProperty	No comments
rdfs:isDefinedBy	conceptProperty	No comments
OWL: Versioning	LexEVS	Comments
owl:versionInfo	codingScheme.representsVersion	No comments
priorVersion	Not Mapped	No comments
backwardCompatibleWith	Not Mapped	No comments
owl:incompatibleWith	association	No comments
–	association.id = "incompatibleWith"	No comments
–	association.forwardName = "incompatibleWith"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName="incompatibleWith"	No comments
DeprecatedClass	Concept attribute setIsActive = false	Not mapped
DeprecatedProperty	—	Not mapped

OWL Mapping - NCI OWL

OWL Element	LexGrid	Comments
OWL: RDF Schema Features	LexGrid	Comments
owl:ontology	codingScheme	Hardcoded "NCI_Thesaurus"
xml:lang	codingScheme.defaultLanguage	Hardcoded "en"
dc:title	codingScheme.formalName	Hardcoded "NCI Thesaurus"
rdfs:label	codingScheme.localName	Hardcoded "NCI_Thesaurus"
–	Hardcoded "40010"	No comments
–	Hardcoded "urn:oid:2.16.840.1.113883.3.26.1.1"	No comments
URI	codingScheme.registeredName	Hardcoded "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#"
owl:versionInfo	codingScheme.representsVersion	No comments
dc:rights	codingScheme.copyright	Read from hardcoded "Terms.txt" file .
rdfs:comment	codingScheme.entityDescription	No comments
–	codingScheme.isNative	Hardcoded "true"
owl:Class (Thing, Nothing)	concept	No comments
code	concept.id	No comments
–	concept.isActive	Hard coded as "true" unless class "owl:DeprecatedClass", then 'false'
–	concept.isAnonymous	No comments
rsfs:label	concept.entityDescription	–
rdf:comment	concept.comment	–
–	conceptProperty	Indicate whether the concept is primative (has no equavalent classes)
–	concept.conceptProperty.propertyName	Hard coded as "primitive"
–	concept.conceptProperty.text	"true"
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	presentation	Provide default presentation to match concept entity description if not provided as property
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "NCI_Preferred_Term"
rdfs:label	concept.presentation.text	concept.entityDescription
–	conceptProperty	Property with designated concept name label (per NCI requirements and used in codeToName/nameToCode lookup).
–	concept.conceptProperty.propertyName	Hard coded as "CONCEPT_NAME"
rdfs:label	concept.conceptProperty.text	concept.entityDescription
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	relation	Top-level container for associations (non-inheritable, non-defining relationships between concepts.
–	relations.dc	Hard coded as "associations"
–	relations.isNative	Hard coded as "true"
–	relations.entityDescription	Hard coded as "Non-inheritable non-defining relations."
–	relation	Top-level container for roles (inheritable relationships)
–	relations.dc	Hard coded as "roles"
–	relations.isNative	Hard coded as "true"
–	relations.entityDescription	Hard coded as "Inheritable/defining relations."
rdfs:subClassOf	association	Association for subtype hierarchy.
–	association.id = "hasSubtype"	No comments
–	association.forwardName = "hasSubtype"	No comments
–	association.reverseName = "isA"	No comments
–	association.isNavigable = "true"	Hard coded as "true"
–	Hard coded as "true"	No comments
–	Hard coded as "false"	No comments
–	Hard coded as "true"	No comments
hasElement	association	Association used to register component classes as elements of anonymous node representations.
–	association.id = "hasElement"	No comments
–	association.forwardName = "hasElement"	No comments
–	association.isNavigable = "true"	Hard coded as "true"
–	Hard coded as "false"	No comments
–	Hard coded as "true"	No comments
rdfs:domain	association	Association for role_has_domain relations
–	association.id = "Role_Has_Domain"	No comments
–	association.forwardName = "roleHasDomain"	No comments
–	association.reverseName = "kindIsDomainOf"	No comments
–	association.isNavigable = "true"	Hard coded as "true"
–	Hard coded as "false"	No comments
–	Hard coded as "false"	No comments
–	Hard coded as "true"	No comments
rdfs:range	association	Association for range relations
–	association.id = "Role_Has_Range"	No comments
–	association.forwardName = "roleHasRange"	No comments
–	association.reverseName = "kindIsRangeOf"	No comments
–	association.isNavigable = "true"	Hard coded as "true"
–	association.isReflexive="false"	Hard coded as "false"
–	association.isSymmetric="false"	Hard coded as "false"
–	association.isTransitive="false"	Hard coded as "false"
rdf:Property (ObjectProperty)	association	An association between two classes (hasDomain, hasRange)
rdfs:subPropertyOf	—	Not mapped
OWL (In)Equality	LexGrid	Comments
owl:equivalentClass	association	Association for equivalent class.
–	association.id = "equivalentClass"	No comments
–	association.forwardName = "equivalentClass"	No comments
–	association.reverseName = "equivalentClass"	No comments
–	association.isNavigable = "true"	Hard coded as "true"	–
–	association.isReflexive="true"	Hard coded as "true"
–	association.isSymmetric="true"	Hard coded as "true"
–	association.isTransitive="true"	Hard coded as "true"
OWL: Property Characteristics	LexGrid	Comments
owl:inverseOf	association	No comments
–	association.id = "inverseOf"	No comments
–	association.forwardName = "inverseOf"	No comments
–	association.isFunctional = "false"	No comments
–	association.isNavigable = "true"	No comments
–	association.isReflexive="true"	No comments
–	association.isSymmetric="true"	No comments
–	association.isTransitive="true"	No comments
–	association.reverseName="inverseOf"	No comments
owl:TransitiveProperty	association.isTransitive	association property 'isTransitive'
owl:SymmetricProperty	association.isSymmetric	association property 'isSymmetric'
owl:InverseFunctionalProperty	association.isReverseFunctional	association property 'isReverseFunctional'
owl:FunctionalProperty	association.isFunctional	association property 'isFunctional'
OWL: Property Restrictions	LexGrid	Comments
owl:Restriction	concept	Anonymous concept created.
–	concept.entityDescription = "RestrictionOn: " + association name	Concatination of "Restriction On: " and assocation name
–	concept.isAnonymous = true	No comments
owl: allValuesFrom	associationQualification.association.Qualifier = "AllValuesFrom"	No comments
owl: someValuesFrom	associationQualification.association.Qualifier = "someValuesFrom"	No comments
owl:intersectionOf	concept.entityDescription	Concatination of "Restriction On: " and assocation name
–	concept.isAnonymous = true	No comments
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	Set to concept.entityDescription
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:intersectionOf"	No comments
owl:unionOf	concept.entityDescription	Concatination of "Restriction On: " and assocation name
–	concept.isAnonymous = true	No comments
–	concept.presentation.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.presentation.propertyName	Hardcoded "textualPresentation"
–	concept.presentation.isPreferred = true	Hardcoded "true"
–	concept.presentation.text	Set to concept.entityDescription
–	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = type	Hardcoded "type"
–	concept.conceptProperty.text = "owl:unionOf"	No comments
owl:oneOf	concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
–	concept.conceptProperty.propertyName = "owl:oneOf"	Hardcoded "owl:oneOf"
–	concept.conceptProperty.text	String of oneOf values
OWL: Annotation Property	LexGrid	Comments
rdfs:comment	Comment	No comments
–	concept.comment.propertyId	Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.
–	concept.comment.propertyName = "comment"	Hardcoded "comment"
–	concept.presentation.text	Value of rdfs:comment
rdfs:seeAlso	conceptProperty	No comments
rdfs:isDefinedBy	conceptProperty	No comments
OWL: Versioning	LexGrid	Comments
owl:versionInfo	codingScheme.representsVersion	No comments
priorVersion	–	Not Mapped
backwardCompatibleWith	–	Not Mapped
DeprecatedClass	–	Not Mapped
DeprecatedProperty	–	Not Mapped

Legacy Complex Properties Mapping

tag	presentation	source	represenational form	qualifier	model element	value column name	model element
go-term	x					propertyValue
go-id				x	propertyQualifierId	val1	PropertyQualifier attribute content?
go-source				x	propertyQualifierId	val1	PropertyQualifier attribute content?
source-date				x	propertyQualifierId	val1	PropertyQualifier attribute content?
term-name	x					propertyValue
term-group			x			representationalForm	property attribute
term-source		x				attributeValue	source
def-source		x				attributeValue	source
def-definition	x				propertyValue	definition
Definition_Review_Date				x	propertyQualifierId	val1	PropertyQualifier attribute content?
Definition_Reviewer_Name				x	propertyQualifierId	val1	PropertyQualifier attribute content?

UMLS SemNet Mapping

Coding Scheme RRF File Name	RRF Column Name	LexGrid Model Element	Comments
		codingScheme.representsVersion	No comments
		codingScheme.codingScheme	hard coded in java file as "UMLS_SemNet"
		codingScheme.formalName	hard coded in java file as "UMLS Semantic Network"
		codingScheme.defaultLanguage	hard coded in java file as "en"
		codingScheme.approxNumConcepts	hard coded in java file as
		codingScheme.entityDescription	hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus."
license.txt		codingScheme.copyright	Read from license.txt file or hard coded reference in java file
		codingScheme.registeredName	hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"
		codingScheme.concepts.dc	hard coded in java file as "concepts"
		codingScheme.relations.dc	hard coded in java file as "relations"
		codingScheme.mappings.dc	hard coded in java file as "mappings"
		codingScheme.localNameList	No comments
		codingScheme.localNameList.	hard coded in java file as "UMLS_SemNet"
		codingScheme.localNameList	No comments
		codingScheme.localNameList.	No comments
		codingScheme.source	No comments
		codingScheme.source.content	No comments
		codingScheme.localNameList	No comments
		codingScheme.localNameList.	No comments
		codingScheme.localNameList	No comments
		codingScheme.localNameList.	No comments
		codingScheme.localNameList	No comments
		codingScheme.localNameList.	No comments
		codingScheme.localNameList	No comments
		codingScheme.localNameList.	No comments
		mappings.supportedFormat	No comments
		mappings.supportedFormat.localId	hard coded in java file as "text/plain"
		mappings.supportedFormat.urn	hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain"
		mappings.supportedAssociation	No comments
SRDEF	RL	mappings.supportedAssociation.localId	No comments
		mappings.supportedContext	No comments
		mappings.supportedSource	No comments
		mappings.supportedSource.localId	hard coded in java file as "NLM"
		mappings.supportedSource.urn	hard coded in java file as "urn:lsid:nlm.nih.gov"
		mappings.supportedHierarchy	No comments
		mappings.supportedHierarchy.localId	hard coded in java file as "is_a"
		mappings.supportedHierarchy.isForwardNavigable	hard coded as "true"
		mappings.supportedHierarchy.rootCode	hard coded as "@"
		mappings.supportedHierarchy.associationList	hard coded in java file as "hasSubtype"
		mappings.supportedAssociationQualifier	No comments
SRFLD	COL	mappings.supportedProperty	No comments
		mappings.supportedProperty.localId	If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such.
		mappings.supportedProperty.urn	hard coded in java file as ""
		mappings.supportedLanguage	No comments
		mappings.supportedLanguage.localId	hard coded in java file as "en"
		mappings.supportedLanguage.urn	hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en"
		mappings.supportedCodingScheme	No comments
		mappings.supportedCodingScheme.localId	hard coded in java file as "UMLS_SemNet"
		mappings.supportedCodingScheme.urn	hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"
		mappings.supportedRepresentationalForm	No comments
		mappings.supportedConceptStatus	No comments
		mappings.supportedPropertyLink	No comments
		mappings.supportedPropertyQualifier	No comments
		mappings.supportedDataType	No comments
Concepts			Comments
SRDEF	UI	concept.id(inherited from Entity)	No comments
SRDEF	STY/RL	concept.enitityDescription(inheritance path Entity->versionableAndDescribable)	No comments
		concept.conceptProperty	No comments
SRDEF	NH	concept.conceptProperty.text.content	No comments
		concept.conceptProperty.format	hard coded in java file as "text/plain"
		concept.conceptProperty.propertyName	hard coded in java file as "NH"
		concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
		concept.presentation	No comments
		concept.presentation.propertyName (inherited from Property)	Hard coded in java file as "STY/RL" or "ABR"
		concept.presentation.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
SRDEF	STY/RL, ABR	concept.presentation.text.content
		concept.presentation.format	hard coded in java file as "text/plain"
		concept.presentation.isPreferred	hard coded in java file as true.
		concept.definition.propertyName (inherited from Property)	Hard coded in java file as "DEF"
		concept.definition.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
SRDEF	DEF	concept.definition.text.content
		concept.definition.format	hard coded in java file as "text/plain"
		concept.definition.isPreferred	hard coded in java file as true.
		concept.comment
SRDEF	EX	concept.comment.propertyName (inherited from Property)	Hard coded in java file as "EX"
		concept.comment.text.content
		concept.comment.format	hard coded in java file as "text/plain"
		concept.comment.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
		concept.instruction
		concept.instruction.propertyName (inherited from Property)	Hard coded in java file as "UN"
SRDEF	UN	concept.instruction.text.content
		concept.instruction.format	hard coded in java file as "text/plain"
		concept.instruction.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
Relations
SRSTR	RL	association.id (inherited from Entity)	In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed
		association.isTransitive	hard coded to true if the value of RL is "isa"
SRSTR	RL	association.forwardName	Reversed when value of RL is "isa"
SRSTR	STY/RL	associationInstance.sourceId	Reversed when value of RL is "isa"
SRSTR	STY/RL	associationTarget.targetId
SRDEF	RIN	association.reverseName
SRDEF	DEF	association.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)	When SRDEF value RT is "RL"
SRSTRE1	UI/STY(first argument)	associationInstance.sourceId	Reversed when value of RL is "isa"
SRSTRE1	UI/STY(2nd argument)	associationTarget.targetId	Reversed when value of RL is "isa"

UMLS Mapping

RRF File Name	RRF Column Name	RRF Definition	NCI Meta only	LexGrid Model Element	Comments
Coding Scheme
MRSAB.RRF	SVER	Release date or version number of a source		codingScheme.representsVersion
MRSAB.RRF	SSN	Source short name		codingScheme.codingScheme
MRSAB.RRF	SON	Source Official Name		codingScheme.formalName
MRSAB.RRF	LAT	Language of Term(s)		codingScheme.defaultLanguage
MRSAB.RRF	TRF	Term frequency for a source		codingScheme.approxNumConcepts
MRSAB.RRF	SCIT	Source citation		codingScheme.entityDescription	inherits entityDescription from versionableAndDescribable
MRSAB.RRF	SCC	Content contact info for a source		codingScheme.copyright
				codingScheme.registeredName	Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)
MRDOC.RRF	EXPL	Detailed explanation	x	codingScheme.representsVersion	Where Dockey = "RELEASE" and value = "umls.release.name"
			x	codingScheme.codingScheme	Hard coded in java file as "NCI MetaThesaurus"
			x	codingScheme.formalName	Hard coded in java file as "NCI MetaThesaurus"
			x	codingScheme.defaultLanguage	Hard coded in java file as "ENG"
MRCONSO.RRF			x	codingScheme.approxNumConcepts	Count of CODE value in MRCONSO.RRF
			x	codingScheme.entityDescription	Hard coded in java file as "NCI MetaThesaurus loaded from RRF files."
			x	codingScheme.copyright	Hard coded in java file as "Some material in the NCI Metathesaurus is from copyrighted sources of the respective copyright claimants. All sources appearing in the NCI Metathesaurus are licensed or authorized for NCI use. Users of the NCI Metathesaurus are responsible for compliance with the terms of these licenses and with any copyright restrictions and are referred to NCI Center of Bioinformatics for license terms and to the copyright notices appearing in the original sources, all of which are obtainable online by reference at http://ncimeta.nci.nih.gov/."
				codingScheme.localNameList	Hard coded as constant in java file as "localName"
MRSAB.RRF	SON	Source Official Name		codingScheme.localNameList.
				codingScheme.localNameList	Hard coded as constant in java file as "localName"
				codingScheme.localNameList.	Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)
				codingScheme.source	Hard coded as constant in java file as "source"
MRDOC.RRF	EXPL	Detailed explanation		codingScheme.source.content	String concatenation of "UMLS-" and value of EXPL
			x	codingScheme.localNameList	Hard coded as constant in java file as "localName"
			x	codingScheme.localNameList.	Hard coded in java file as "NCI Thesaurus"
			x	codingScheme.localNameList	Hard coded as constant in java file as "localName"
			x	codingScheme.localNameList.	Hard coded in java file as "NCI_Thesaurus"
			x	codingScheme.localNameList	Hard coded as constant in java file as "localName"
			x	codingScheme.localNameList.	Hard coded in java file as "10001"
			x	codingScheme.localNameList	Hard coded as constant in java file as "source"
			x	codingScheme.localNameList.	Hard coded in java file as "RRF Files"
				mappings.supportedFormat	Hard coded as constant in java file as "Format"
				mappings.supportedFormat.localId	Hard coded as one of several constants in a java file
				mappings.supportedAssociation	Hard coded as constant in java file as "Association"
MRREL.RRF	REL, RELA	Relationship, Relationship attribute		mappings.supportedAssociation.localId
				mappings.supportedContext	Hard coded as constant in java file as "Context" May not be used in individual RRF load
				mappings.supportedSource	Hard coded as constant in java file as "Source" May not be used in individual RRF load
				mappings.supportedHierarchy	Hard coded as constant in java file as "Hierarchy"
				mappings.supportedAssociationQualifier	Hard coded as constant in java file as "AssociationQualifier"
				mappings.supportedProperty	Hard coded as constant in java file as "Property"
				mappings.supportedLanguage	Hard coded as constant in java file as "Language"
				mappings.supportedCodingScheme	Hard coded as constant in java file as "CodingScheme"
				mappings.supportedRepresentationalForm	Hard coded as constant in java file as "RepresentationalForm"
				mappings.supportedConceptStatus	Hard coded as constant in java file as "ConceptStatus"
				mappings.supportedPropertyLink	Hard coded as constant in java file as "PropertyLink"
				mappings.supportedPropertyQualifier	Hard coded as constant in java file as "PropertyQualifier"
				mappings.supportedDataType	Hard coded as constant in java file as "DataType"
Concepts
MRCONSO.RRF	CODE	Unique Identifier or code for string in source		concept.conceptCode
MRCONSO.RRF	CUI	Unique identifier for concept	x	concept.conceptCode
				concept.isActive	Hardcoded in parameter as true.
				concept.conceptStatus	Hard coded as constant in java file as "Active"
				concept.isAnonymous	Hardcoded in parameter as false.
MRCONSO.RRF	STR	String		concept.entityDescription
				concept.conceptProperty.Format	Hard coded as constant in java file as "text/plain" or null
				concept.conceptProperty.propertyName	May be hard coded as constant in java file as one of several properties.
				concept.conceptProperty.usageContext
				concept.conceptProperty.propertyId	Generated value for property using "P" concatenated with a steadily incremented numerical value.
				concept.presentation.propertyId	Generated value for property textual presentation using "T" concatenated with a steadily incremented numerical value.
				concept.comment.propertyId	Generated value for property comment using "C" concatenated with a steadily incremented numerical value.
				concept.definition.propertyId	Generated value for property definition using "D" concatenated with a steadily incremented numerical value.
				concept.instruction.propertyId	Generated value for property instruction using "I" concatenated with a steadily incremented numerical value.
MRCONSO.RRF	CUI	Unique identifier for concept		concept.conceptProperty.text.content.
				concept.conceptProperty.propertyId	Generated value for property using "CUI" concatenated with a steadily incremented numerical value.
				concept.conceptProperty.propertyName	hard coded as constant in java file as "UMLS_CUI"
				concept.conceptProperty.propertyType	hard coded as constant in java file as "property"
				concept.conceptProperty.format	left as null
MRSTY.RRF	STY	Semantic type		concept.conceptProperty.text.content
				concept.conceptProperty.propertyId	Generated value for property using "SemType" concatenated with a steadily incremented numerical value.
				concept.conceptProperty.propertyName	hard coded as constant in java file as "Semantic_Type"
				concept.conceptProperty.propertyType	hard coded as constant in java file as "property"
				concept.conceptProperty.format	Hard coded as constant in java file as "text/plain"
MRCONSO.RRF	LAT	Language of Term(s)		concept.conceptProperty.language	Logic of code simply selects the first definition in the source as the preferred source
MRCONSO.RRF	TS	Term status		concept.presentation.isPreferred	One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.
MRCONSO.RRF	STT	String type		concept.presentation.isPreferred	One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.
MRCONSO.RRF	ISPREF	Indicates whether AUI is preferred		concept.presentation.isPreferred	One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.
MRRANK.RRF	RANK	Termgroup ranking		concept.presentation.isPreferred	One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.
				concept.presentation.isPreferred
MRDEF.RRF	DEF	Definition		concept.definition.text.content
				concept.definition.isPreferred	Logic of code simply selects the first definition in the source as the preferred source
MRSAT.RRF	ATN	Attribute name		concept.conceptProperty.propertyType	Translated to a LexGrid property type. For values AN, CX, HN this property is typed as a "COMMENT" in LexGrid. For value EV this property is typed "PRESENTATION" This only occurs when the STYPE points to the CODE, SCUI or SDUI columns in MRREL.RRF or MRCONSO.RRF. If the STYPE points to SAUI then the values are loaded as property qualifiers.
MRSAT.RRF	ATV	Attribute value		concept.conceptProperty.propertyValue
MRSAT.RRF	ATN	Attribute name		concept.conceptProperty.propertyQualifier.propertyQualifierId	If the STYPE points to SAUI then the value is loaded as a property qualifier attribute
MRSAT.RRF	ATV	Attribute value		concept.conceptProperty.propertyQualifier.content	If the STYPE points to SAUI then the value is loaded as a property qualifier attribute
MRCONSO.RRF	SAB		x	concept.conceptProperty.source.content
			x	concept.conceptProperty.propertyQualifier.propertyQualifierId	hard coded as constant in java file as "source-code"
MRCONSO.RRF	CODE		x	concept.conceptProperty.propertyQualifier.content
			x	concept.conceptProperty.propertyQualifier.propertyQualifierId	hard coded as constant in java file as "AUI"
MRCONSO.RRF	AUI		x	concept.conceptProperty.propertyQualifier.content
				concept.presentation.representationalForm	When ATN value is EV this presentation will be given a representationalForm of "Abbrev."
MRCONSO.RRF	TTY	Term type in source		concept.presentation.representationForm	When TTY value is FN then representationalForm is represented as "Full Form" Otherwise the representationalForm is the same as the TTY source (i.e. if TTY is PT then representationalForm is PT.) PT is one of the preferred presentations.
				concept.conceptProperty.propertyQualifier.propertyQualifierId	hard coded as "HCD"
MRHIER.RRF	HCD	Source asserted hierarchical number or code for this atom in this context		concept.conceptProperty.propertyQualifier.content	This propertyQualifier is present when the HCD is populated in the the MRHIER file. The corresponding code and property for concept or code is qualified as a code or concept with a context derived heirarchy.
Relations
MRREL.RRF	CUI1	Unique identifier for first concept
MRREL.RRF	AUI1	Unique identifier for first atom
MRCONSO.RRF	CODE	Unique Identifier or code for string in source		ConceptReference.conceptCode	(Model element is a ResolvedConceptReference with the value sourceOf attached to the appropriate AssociationList containing this particular REL or RELA association name.) Mapping to the CODE depends upon the CUI or a combination of CUI and AUI values. If the CODE value is "NOCODE" then LexBIG concatenates "NOCODE" with a "-" and the CUI value. Target or source code value requires use of the DIR flag which indicates the directionality of the relationship in REL or RELA. CUI1 can be used as a pointer to the source CODE value if DIR equals Y, else CUI1 is the targetCode. Similarly, if an AUI exists AUI1 can be an indicator for CODE value to be either or source or target depending on the DIR flag.
MRREL.RRF	CUI2	Unique identifier for second concept
MRREL.RRF	AUI2	Unique identifier for second atom
MRCONSO.RRF	CODE	Unique Identifier or code for string in source		ConceptReference.conceptCode	(Model element is a ResolvedConceptReference with the value targetOf attached to the appropriate AssociationList containing this particular REL or RELA association name.) Mapping to the CODE depends upon the CUI or a combination of CUI and AUI values. If the CODE value is "NOCODE" then LexBIG concatenates "NOCODE" with a "-" and the CUI value. Target or source code value requires use of the DIR flag which indicates the directionality of the relationship in REL or RELA. CUI2 can be used as a pointer to the source CODE value if DIR equals Y, else CUI1 is the targetCode. Similarly, if an AUI exists AUI2 can be an indicator for CODE value to be either or source or target depending on the DIR flag.
MRREL.RRF	DIR	Source asserted directionality flag			The UMLS directional flag. Y indicates that this is the direction of the RELA relationship in its source; N indicates that it is not; otherwise indicates that it is not important or has not yet been determined. (If blank RELA, we interpret as 'N', based on empirical review of meta files).
MRREL.RRF	RELA	Relationship attribute		association.id (id inherited from Entity)	Source defined associations. If RELA value is "inverse_isa" then it is changed to "hasSubtype." All others mapped as defined in source.
MRREL.RRF	REL	Relationship		association.id (id inherited from Entity)	UMLS defined associations
MRSAT.RRF	METAUI	Metathesaurus asserted unique identifier			Presence of RUI in MRSAT.RRF METAUI column indicates the association defined in MRREL has an association qualifier. Currently only MedDRA uses these.
MRSAT.RRF	ATN			AssociatedConcept.nameAndValueList.name
MRSAT.RRF	ATV			AssociationQualification.nameAndValueList.content
				AssociatedConcept.nameAndValueList.name	qualifier name is hard coded to "HCD" This association qualifier is attached to an association when the HCD field in MRHIER.RRF is populated. Associations are identified by evaluating a structured series of AUI's that describe the path to root (PTR field in MRHIER) Once these associations are identified they have and association qualifier attached to them with the value of the HCD loaded as the qualifier.
MRHIER.RRF	HCD			AssociationQualification.nameAndValueList.content
MRSAB.RRF	SSN	Source short name		association.codingSchemeId (Inherited from Entity)
MRREL.RR	REL or RELA	Relationship or Relationship attribute		association.forwardName	unqualified REL or RELA value (inverse_isa remains the same)
MRDOC.RRF	EXPL	Detailed explanation		association.reverseName	Where DOCKEY in MRDOC equals REL or RELA and value is the association name and TYPE is REL or RELA name prepended to "_inverse".
				association.inverse	Hard coded as a blank string.
				association.isAntiReflexive	hard coded to null.
				association.isAntiSymmetric	hard coded to null.
				association.isAntiTransitive	hard coded to null.
				association.isAntiTransitive	hard coded to null.
				association.isNavigable	hard coded as Boolean with value true.
				association.isReflexive	hard coded to null.
				association.isReverseFunctional	hard coded to null.
				association.isSymmetric	hard coded to null.
MRREL.RRF	SAB, REL, RELA	Source abbreviation		association.isTransitive	True when the name of the association can be mapped to a source defined in the SAB attribute of MRREL.RRF. Not the SAB value itself, but extrapolated from it using SAB to REL, RELA relationship.
				association.isTranslationAssociation	hard coded to null.
				association.targetCodingScheme	hard coded to null.
				association.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)	Hard coded to: "UMLS-defined relationships"
				relations.dc	If REL, this is hard coded as "UMLS-Relations" if RELA then it is hard coded to "Relations"
MRREL.RRF	REL, RELA		x	propertyLink.link	This is a link established when the MRREL.RRF file contains a relationship where the CUI is related to itself. Under these conditions the relationship is mapped as a property link with the MRREL defined relationship mapped as the link value.
			x	propertyLink.sourceProperty	Generated as a propertyId for concept, ex: "T-10" This is retrieved based on the AUI value in MRCONSO.RRF from the entityPropertyMultiAttrib table where the AUI equals the attributeValue column.
			x	propertyLink.targetProperty	Generated as a propertyId for concept, ex: "T-10" This is retrieved based on the AUI value in MRCONSO.RRF from the entityPropertyMultiAttrib table where the AUI equals the attributeValue column.

SNOMED UMLS Mapping

RRF File Name	RRF Column Name	RRF Definition	LexGrid Model Element	Comments
RSAB.RRF	SVER	Release date or version number of a source	codingScheme.representsVersion
RSAB.RRF	SSN	Source short name	codingScheme.codingScheme?
RSAB.RRF	SON	Source Official Name	codingScheme.formalName
			codingScheme.defaultLanguage	Hard coded to "en"
MRSAT.RRF	ATV		concept.presentation.language	Unique to snomed.

OBO Mapping

OBO Class	OBO Entity	LexGrid Model Element	Notes
Document Header	format-version		Not mapped.
Document Header	data-version	CodingScheme.representsVersion	Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED"
Document Header	version	CodingScheme.representsVersion	Deprecated - use data-version if present.
Document Header	date		Not mapped.
Document Header	saved-by		Ignored but included if contained in the remark entity.
Document Header	auto-generated-by		Ignored but included if contained in the remark entity.
Document Header	subsetdef		Not mapped.
Document Header	import		Deprecated - Imports are used to assemble a larger document from smaller.
Document Header	typeref		Deprecated.
Document Header	synonymtypedef		Not mapped.
Document Header	idspace		Not mapped.The idspace is a triple - localName, URN and description.
Document Header	default-relationship-id-prefix		Not mapped.
Document Header	id-mapping	CodingScheme.supportedAssociation	This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation.
Document Header	remark	CodingScheme.entityDescription	Will combine multiple remark entities into the entityDescription.
Document Header	default-namespace	codingScheme.codingScheme	Will use default-namespace if provided; otherwise will use filename without the extension.
Document Header	default-namespace	codingScheme.formalName	Will use default-namespace if provided; otherwise will use filename without the extension.
Document Header	default-namespace	codingScheme.registeredName	Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension.
		codingScheme.defaultLanguage	Hardcoded "en"
		codingScheme.isNative	Hardcoded "true"
Stanza	id	CodedEntry.conceptCode
Stanza	name	CodedEntry.entityDescription
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bbc81a30-89c8-4e9e-b334-8fa4e3ff6e8a"><ac:plain-text-body><![CDATA[			CodedEntry.presentation['textualPresentation'].text		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5d132ff5-d92f-49ef-bbc1-55d8cb9c4517"><ac:plain-text-body><![CDATA[			CodedEntry.presentation['textualPresentation'].isPreferred = true		]]></ac:plain-text-body></ac:structured-macro>
Stanza	alt_id
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6128f0ea-b868-4be6-b398-ffb3361a30f6"><ac:plain-text-body><![CDATA[			CodedEntry.property['alt_id'].propertyId		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6fd8c9c0-90b4-49c5-8ae4-7e673d2fc8df"><ac:plain-text-body><![CDATA[			CodedEntry.property['alt_id'].text		]]></ac:plain-text-body></ac:structured-macro>
Stanza	is_anonymous	CodedEntry.isAnonymous = true
Stanza	is_obsolete	CodedEntry.isActive = false
Stanza	def	CodedEntry.definition
		CodedEntry.definition.isPreferred = true
Stanza	def.dbxref		See dbxref
Stanza	comment	CodedEntry.comment.text
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c2217042-4994-4f58-94d6-1952f1eae218"><ac:plain-text-body><![CDATA[	Stanza	subset	property[subset tag]	See subsetdef	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2d149654-00dc-4e9f-8618-48078616f8c4"><ac:plain-text-body><![CDATA[	Stanza	synonym	presentation['textualPresentation'].text		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d5d2f5b8-6c2a-4a56-bdcb-18a8378824fa"><ac:plain-text-body><![CDATA[	Stanza	synonym.scope	presentation['textualPresentation'].degreeOfFidelity		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="12d58cbe-1685-4941-beb9-5a7f06bf04fc"><ac:plain-text-body><![CDATA[	Stanza	synonym.type	presentation['textualPresentation'].representationalForm		]]></ac:plain-text-body></ac:structured-macro>
Stanza	synonym.dbxref		(see dbxref)
Stanza	exact_synonym		See synonym
Stanza	narrow_synonym		See synonym
Stanza	broad_synonym		See synonym
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e0a4c3db-fe90-4db4-b140-a500f17986e3"><ac:plain-text-body><![CDATA[	Stanza	xref	associations.['mapsTo']		]]></ac:plain-text-body></ac:structured-macro>
Stanza	xref_analog		See synonym
Stanza	xref_unk
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9fb555e6-2bc5-4896-bc18-9f79ccbfdc9c"><ac:plain-text-body><![CDATA[	Stanza	is_a	associations.['hasSubtype']	Reverse of the source and target.	]]></ac:plain-text-body></ac:structured-macro>
Stanza	is_a.namespace		If present, the supplied namespace becomes the owning "codingScheme".
Stanza	is_a.derived	associations.hasSubtype.associationQualifier	If present, need to include derived in the supportedAssociationQualifiers section
Stanza	intersection_of		Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets.
Stanza	union_of		Same as OWL
Stanza	disjoint_from		Same as OWL
Stanza	relationship	associations.
Stanza	relationship.not_necessary	associations..associationQualifier
Stanza	relationship.inverse_necessary	associations..associationQualifier
Stanza	relationship.namespace		If present, the supplied namespace becomes the owning "codingScheme".
Stanza	relationship.derived	associations..associationQualifier
Stanza	relationship.cardinality	associations..associationQualifier
Stanza	relationship.maxCardinality	associations..associationQualifier
Stanza	relationship.minCardinality	associations..associationQualifier
Stanza	is_obsolete	codedEntry.isActive = false
Stanza	replaced_by
Stanza	consider		Not Mapped
Stanza	use_term		(deprecated)
dbxref	dbxref name	CodedEntry..source
	supportedSource		dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc
dbxref	dbxref description		Not mapped.
dbxref	trailing modifiers		Not mapped.
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b78899b7-1ee7-41f8-a60e-47eb15a0a910"><ac:plain-text-body><![CDATA[	typeDef Stanza	domain	associations.['has_domain']		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1b273aa0-876e-4f0a-a099-cdde42c995c4"><ac:plain-text-body><![CDATA[	typeDef Stanza	range	associations.['has_range']		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3dc922ad-187c-4288-a887-fb418bd02c8a"><ac:plain-text-body><![CDATA[	typeDef Stanza	is_cyclic	property['is_cyclic']		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="841c2134-cb11-41c1-b10b-8949728bacb7"><ac:plain-text-body><![CDATA[	typeDef Stanza	is_reflexive	property['is_reflexive']		]]></ac:plain-text-body></ac:structured-macro>
		association.isReflexive
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9e21a363-72e1-46bd-ab64-30ae71582d93"><ac:plain-text-body><![CDATA[	typeDef Stanza	is_symmetric	property['is_symmetric']		]]></ac:plain-text-body></ac:structured-macro>
		association.isSymmetric
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c5431279-758e-4d1a-9ee7-1595f76aec16"><ac:plain-text-body><![CDATA[	typeDef Stanza	is_transitive	property['is_transitive']		]]></ac:plain-text-body></ac:structured-macro>
		association.isTransitive
typeDef Stanza	inverse_of	association.inverse
instance stanza	id	same rules as general stanza	same rules as general stanza
instance stanza	name	same rules as general stanza	same rules as general stanza
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c846a03b-1d87-4f28-82ae-9d28cef58ff0"><ac:plain-text-body><![CDATA[	instance stanza	instance_of	association['has_instance']		]]></ac:plain-text-body></ac:structured-macro>
instance stanza		CodedEntry.property.property=""	data type properties go in Coded Entry property section

HL7 RIM Mapping

HL7 Table	HL7 Column	LexGrid Model Element	Notes	Intentionally Not mapped
Model	<modelID>	<codingSchemeName>
	<name>	<formalName>
	<registeredName>	http://www.hl7.org/Library/data-model/RIM *[1]
	<defaultLanguage>	en*
	<versionNumber>	<representsVersion>
	<isNative>	0*
	<approximateNumberofConcepts>	Result of count on concept bearing table?
	<firstRelease>	MISSING
	<modifiedRelease>	MISSING
	<deprecated>	MISSING
	<description>	<entityDescription>
	<copyright>	MISSING
VCS_code_system	codeSystemId	codingScheme.registeredName	Moved to metadata file.
	codeSystemType	commonTypes::Properties	This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file.
	codeSystemName	concept.conceptCode	Moved to metadata file.
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ed465c6f-4ed5-4318-a468-ee900530ed01"><ac:plain-text-body><![CDATA[		codeSystemName	concept.presentation['textualPresentation'].text		]]></ac:plain-text-body></ac:structured-macro>
	fullName	codingScheme.formalName
	description	codingScheme.entityDescription	Moved to metadata file.
	releaseId	codingScheme.representsVersion	Moved to metadata file.
	copyrightNotice	codingScheme.copyright	Moved to metadata file.
	literal('en')	codingScheme.defaultLanguage	Moved to metadata file.
VCS_concept_code_xref	internalId
	Concept Code	concept.conceptCode		RIM db column conceptCode2
	Case Difference	commonTypes::Properties	Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure)	RIM db column codeInstance
	Status	concept.isActive=(conceptStatus=='A'?)		RIM db column conceptStatus
		concept.conceptStatus	Not used by HL7. A = isActive, R = retired
VCS_concept_designation	internalId		foreign key
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8ea6044f-12f7-4d3f-860f-abb0b30ad679"><ac:plain-text-body><![CDATA[		designation	concept.presentation['textualPresentation'].text		]]></ac:plain-text-body></ac:structured-macro>
	designationSeq
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c674a7bb-889e-4cdc-86aa-79ce772a903c"><ac:plain-text-body><![CDATA[		language	concept.presentation['textualPresentation'].language	Can be omitted if language = default language	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f7d6f1e5-aa94-490b-9c8d-8e014b124c20"><ac:plain-text-body><![CDATA[		preferredForLanguage	concept.presentation['textualPresentation'].isPreferred		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d24618ae-1859-4d77-b146-3a01d2fb996f"><ac:plain-text-body><![CDATA[	VCS_concept_description	internalId	with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition	foreign key	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1d06d914-f9b0-4ede-8dd3-cc46ea5e32a7"><ac:plain-text-body><![CDATA[		description	concept.presentation['textualPresentation'].text		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b0af2e82-5db8-4fa4-a64e-838c89911637"><ac:plain-text-body><![CDATA[		language	concept.presentation['textualPresentation'].language		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="29853187-eda8-446e-9316-83ba32806a66"><ac:plain-text-body><![CDATA[		literal('true')	concept.presentation['textualPresentation'].isPreferred		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="16c22eda-e7c3-4891-a0db-6b1625dc6635"><ac:plain-text-body><![CDATA[		uniqueId()	concept.presentation['textualPresentation'].propertyId		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0f4287ad-4212-4d34-a005-4f90dffc623c"><ac:plain-text-body><![CDATA[		literal('definition')	concept.presentation['textualPresentation'].property		]]></ac:plain-text-body></ac:structured-macro>
VCS_concept_property	internalId		foreign key
	propertyCode	concept.property.property
	propertySeq		Currently not used by HL7
	propertyValue	concept.property.text
	language	concept.property.language
VCS_concept_relationship	relationCode	association.association
	sourceInternalId	associationInstance.sourceConcept
	targetInternalId	associationTarget.targetConcept
Model	modelID	systemRelease.releaseId
	name	service.service
	versionNumber	service.version
	lastModifiedDate	systemRelease.releaseDate
	developingOrganization	systemRelease.releaseAgency
	committeeID
	description	systemRelease.entityDescription
	concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)	systemRelease.releaseURN
	literal('true')	systemRelease.isLatest	Also have to set the prior release isLatest to false
	preceding-sibling/releaseOrder + 1	systemRelease.releaseOrder
Model	modelID	commonTypes::Properties
(Special mapping for NCI)	name	codingScheme.localName
	versionNumber	codingScheme.representsVersion
	lastModifiedDate	commonTypes::Properties
	developingOrganization	commonTypes::Properties
	committeeID
	description	codingScheme.entityDescription
	concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)	codingScheme.registeredName
	literal('true')	commonTypes::Properties	Also have to set the prior release isLatest to false
	preceding-sibling/releaseOrder + 1	commonTypes::Properties
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bc7311e2-cac6-4bea-a9fe-868f918dae4d"><ac:plain-text-body><![CDATA[	RIM_vocabulary_domain	vocDomain	codingscheme["VocabularyDomain"].concept.conceptCode	Vocabulary Domains are carried in a code system of vocabulary domains.	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9237af3d-a7b2-43d8-8f7d-99495f772b6e"><ac:plain-text-body><![CDATA[			codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text	preferredPresentation	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="98becadd-340c-4d9d-bf53-f772edc5a3d8"><ac:plain-text-body><![CDATA[		description	codingscheme["VocabularyDomain"].concept.definition.text	preferredDefinition for code	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="07df35e7-961c-43d8-8b13-505af5b0fbdc"><ac:plain-text-body><![CDATA[		restrictsDomain	codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept	Should this be hasSubtype or something else?	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="362d82cd-51c1-4c72-b5d8-c31ac999ba6c"><ac:plain-text-body><![CDATA[			codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain		]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7075f8e1-0286-4b4a-ab3f-e3eeb4d338cb"><ac:plain-text-body><![CDATA[	VOC_code_reference	usedToBuildValueSet	with(valueDomain[registeredName=current()/.])		]]></ac:plain-text-body></ac:structured-macro>
	referencesConceptCode	...valueDomainEntry/conceptCode	1) id is synthesized 2) Only stored if isHeadCode h1. false or includeReferencedCode true
	referencesInternalId		Internal id's aren't exposed in lexGrid
	relationship	...valueDomainEntry/includeChildren = (relationship == 'hasSubtype')	Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any.
	includeReferencedCode	...valueDomainEntry/isSelectable		Not in current implementation
	leafOnly		Not used in HL7 Model
	directChildrenOnly		Not used in HL7 Model
	isHeadCode		Only used when referenced in VOC_value_set_constructor.
	referencesCodeSystem	.../valueDomainEntry.codingScheme	Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem
	arbitraryUniqueValue()	.../valueDomainEntry.id
VOC_registered_code_system	codeSystemId		VOC_registered_code_system isn't currently transferred to Lexgrid
	sponsor
	publisher
	versionReportingMethod
	licensingInformation		This field should really be transfer to copyright?
	inUMLS
	systemSpecificLocatorInfo
	uri
	isExternal
VOC_value_set	valueSetId	valueDomain.registeredName
	valueSetName	valueDomain.valueDomain	Name is the key in LexGrid, and is optional in HL7 - will need to be addressed.
	basedOnCodeSystem	valueDomain.defaultCodingScheme	Optional in HL7, required in LexGrid.
	description	valueDomain.entityDescription
	definingExpression		Not used.
	allCodes
	isTaxonomicSet		No mapping available
	valueSetAuthority		Included in valueSetID
	valueSetNumber
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9fb5a5d9-d5ae-4fae-86a3-30e083ef82c3"><ac:plain-text-body><![CDATA[	VOC_value_set_constructor	usedToBuildValueSet	new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique())		]]></ac:plain-text-body></ac:structured-macro>
	includesOrExcludesSet	valueDomainEntry.includesValueDomain
	includeHeadCode	valueDomainEntry.isSelectable
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8746273d-143b-45e2-9ec4-b120a9d18a42"><ac:plain-text-body><![CDATA[			valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode	Assumes that there always is a head code.	]]></ac:plain-text-body></ac:structured-macro>
VOC_vocabulary_domain_value_set	representsVocDomain	(selector)
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6d1ad960-42bf-4a72-ba9c-a732ffb18065"><ac:plain-text-body><![CDATA[		definedByValueSet	codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text	have to get 'representsVocDomain' into supportedProperty header	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="da65b2ea-6923-4bc1-a0a7-38843d067355"><ac:plain-text-body><![CDATA[		appliesInContext	codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext	Have to get all the contexts in the VocabularyDomain supportedContext header	]]></ac:plain-text-body></ac:structured-macro>
VCS_release_version	releaseId	codingSchemeVersion.version	Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change.
		valueDomainVersion.version	Set iff one or more value sets change
	literal("false")	codingSchemeVersion.isComplete	All versions are delta's in this model
	releaseAgency
	releaseDate	codingSchemeVersion.versionDate
	valueDomainVersion.versionDate
	description	codingSchemeVersion.entityDescription
	valueDomainVersion.entityDescription
	editorID		There is no place for these currently.
	forWhomID		There is no place for these currently.
	concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)		This corresponds to the containing system release when the sytem release occurs. It is empty until then.

LexGrid Text Mapping

Source Definition											Comments
		Column	1	2	3	4	5	6	7	8
Line	1		<codingSchemeName>	<codingSchemeId>	<defaultLanguage>	<formalName>	version	[<source>]	description	copyright	This must be the first line. It contains the coding scheme metadata.
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1e25d188-29f6-473f-92db-492628e7552a"><ac:plain-text-body><![CDATA[		2		[<code>]	<name>	description						Beginning of concepts in coding scheme.	]]></ac:plain-text-body></ac:structured-macro>
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b2812e33-ab6e-403d-8bd9-76e9ae10fda8"><ac:plain-text-body><![CDATA[		3		[<code>]	<name>	description						Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name)	]]></ac:plain-text-body></ac:structured-macro>

Text Element	LexGrid	Comments
Coding Scheme
codingSchemeName	codingScheme.codingSchemeName
codingSchemeId	codingScheme.codingSchemeId
defaultLanguage	codingScheme.defaultLanguage
formalName	codingScheme.formalName
version	codingScheme.representsVersion	Optional
source	codingScheme.source	Optional
description	codingScheme.entityDescription	Optional
copyright	codingScheme.copyright	Optional
Concepts
code	concept.conceptCode	Optional
name	concept.conceptName
description	concept.entityDescription

No comments

An association between one class (domain) and one asscoication (domain and hasDataProperty). The conceptProperty defines the ra

concept.conceptProperty.text = "owl:intersectionOf