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Example Files:

This page provides examples for the ISA-TAB-Nano Investigation files, leveraging data from the Nanotechnology Characterization Laboratory (NCL) as an example (NCL200612A).

TABLE 1. ISA-TAB-Nano Investigation File Extensions to ISA-TAB

Section

Field

Field Status (if applicable)

INVESTIGATION

Investigation disease

Required

INVESTIGATION

Investigation disease term accession number

Required

INVESTIGATION

Investigation disease term source REF

Required

INVESTIGATION

Investigation outcome

Optional

STUDY

Study disease

Required

STUDY

Study disease term accession number

Required

STUDY

Study disease term source REF

Required

STUDY

Study outcome

Optional

STUDY ASSAYS

Study assay measurement name

Required

STUDY ASSAYS

Study assay measurement name term accession number

Required

STUDY ASSAYS

Study assay measurement name term source REF

Required

Ontology Source Reference

TABLE 2: Example Investigation File Ontology Source Reference Section

!inv_ontology.PNG,alt="file as identified"!

Investigation

TABLE 3: Example Investigation File Investigation Section

!inv.PNG,alt="file as identified"!

Investigation Contacts

TABLE 4: Example Investigation File Investigation Contacts Section

!inv_contacts.PNG,alt="file as identified"!

Investigation Publication

TABLE 5. Example Investigation Publication Section

!inv_publications.PNG,alt="file as identified"!

Study

TABLE 6. Example Investigation File Study Section

!inv_study.PNG,alt="file as identified"!

Study Design Descriptors

TABLE 7. Example Investigation File Study Design Descriptors Section

!inv_study_design.png,alt="file as identified"!

Study Contacts

TABLE 8. Example Investigation File Study Contacts Section

!inv_study_contacts.png,alt="file as identified"!

Study Publications

TABLE 9. Example Investigation File Study Publications Section

!inv_study_publications.PNG,alt="file as identified"!

Study Assays

TABLE 10. Example Investigation File Study Assays Section

!inv_study_assay.PNG,alt="file as identified"!

Study Factors

TABLE 11. Example Investigation File Study Factors Section

!inv_study_factors.PNG,alt="file as identified"!

Study Protocols

TABLE 12. Example Investigation File Study Protocols Section
!inv_study_protocols.PNG,alt="file as identified"!

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