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Google Analytics Report:

Activities completed this month

  • MIDRC is up and running and challenge details are being ironed out: https://midrc-medici-competitions.eastus.cloudapp.azure.com/
  • CodaLab (Open Source Team):
  • Federated learning challenge:
  • True-CT Challenge
    • There were some upload data issues where participants were getting permission denied when trying to sign into their sftp file shares.
    • Otherwise things are good and we have pushed the phase to submit back to May 31st.
  • DL-SPARSE Challenge
    • We are in the validation phase and data for that phase has been updated:
      • ground truth
      •  test set has been added to sftp server
  • SIRPRISE Challenge
    • There may be an email bug so working with Diane to iron that out. UPDATE: I believe we fixed this. Sometimes though CodaLab is blocked and emails are sent to spam. Not sure how to deal with that yet.
    • Challenge is over on the 23rd due to supply issues of some chemicals. 
Planned for next month
  • MIDRC Challenge 0 which will feature docker submissions as well as the Image Comparator app and a jupyter notebook for annotator analysis. - Still waiting on credits for Azure use.
    • UPDATE (3/31/2022): Infrastructure is built and now we are editing the template challenge to be the real challenge. 
  • Federated Learning Challenge: 
    • Still need VPN access to environment.
    • Kendall Schmidt (from ACR) and Holger Roth (from NVIDIA) are creating a bash script that kicks off a participant container. 
    • I will be in charge of orchestrating the start of that script from the MedICI website.
  • CodaLab (Open Source Team): 
    • Adding more functionality to the highlights page for the addition of dynamic news.
Paused
  1. Continue getting CodaLab running on NCI's network and VMs:
    1. Issues:
      1. Credentials for AWS bucket not active and we cannot talk to the bucket. Need to reach out to Tony Bigham (tony.bigham@nih.gov) to get those refreshed. 
      2. On my local machine I deployed the updated CodaLab code and tried connecting to my own S3 bucket instance. I noticed that there is a javascript error making the request to the bucket. I need to setup up a similar but more simple setup to figure out how to upload data to s3 via javascript http requests so that I can trouble shoot the error on NCI's system and or mine. If we could use Azure, this might be resolved.
    2. UPDATE (01_31_2022): May have a work around with a storage service called MINIO.
    3. UPDATE (03_31_2022): The CodaLab (Open Source Team) has updates to the python2 → python3 update branch on github and I think it will work on NCI's network.

MeetingDate
Bi-weekly Meeting #1

 

Bi-weekly Meeting #2

 

Milestones

DescriptionDate
Fed Learning Challenge for MICCAI underway

 

Python3 version of CodaLab may be ready for NCI's environment.

 

Task in Progress

Description
Launching DL-Sparse Challenge from Emil soon. This is version 2.

Risks

Description

Mitigation

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Status

Creation Date

Realization

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