NIH | National Cancer Institute | NCI Wiki  

WIKI MAINTENANCE NOTICE

Please be advised that NCI Wiki will be undergoing maintenance Monday, July 22nd between 1700 ET and 1800 ET and will be unavailable during this period.
Please ensure all work is saved before said time.

If you have any questions or concerns, please contact the CBIIT Atlassian Management Team.

Error rendering macro 'rw-search'

null

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

Version 1 Current »

Date

Attendees

Agenda

  • Data release
    • Release of LUAD Acetylome data to coincide with the publication of the two major LUAD studies from CPTAC and Academia Sinica in Cell (July 9)
    • Publication details added to Lung cancer studies from CPTAC3 and Academia Sinica (July 13) 
  • Updates on Scientific committee, next steps
  • CPTAC data portal migration discussion  
  • Next dataset release priorities
    • CPTAC3 UCEC Acetylome - ongoing
    • CPTAC3 Lung Squamous Cell Carcinoma (LSCC) - proteome, phosphoproteome, acetylome - waiting for data from DCC 
  • Ongoing work (previous and ongoing sprints) - 

- Release acetylome datasets, bug fixes

- Released a data submission template as a spreadsheet workbook

- search bar improvements - text annotation, ordering of results, etc

- release of a data submission template as a spreadsheet workbook

- worked on ability to reuse the previously released biospecimens for new studies

- reorganizing heatmap files, API updates to use the new PDC study identifier (e.g. PDC000nnn)

  • Workspace feature enhancements include -

- ability to load annotations during file upload that will help in streamline study creation,

- ability to accept data_source (submiiter or PDC) and embargo_date  

- file-set validation based on instrument specific file formats , e.g. Sciex models,

- adding support for Acetylome, etc 
- Other minor improvements

  • External interactions
    • MSFragger webinar - mention of PDC - SBG integration 
    • SBG talk at next bi weekly call 
  • Other items

Discussion items

TimeItemWhoNotes



LUAD Acetylome data released last week and supports two publications, one of which uses the new IDs for PDC.



Scientific Committee: haven't heard from 2 people, but Mike MacCoss has reached out and internal discussions were held on how to organize the call.  Proposing 1.5-2 hr. call. Topics: Data hosting, development efforts, findability, APIs.  Short 15 presentations with ~10 min of time for feedback.  Looking for feedback on agenda.  Paul Rudnick volunteers to do section on CDAP output/APIs.   Doodle poll to be sent out for times - targeting early to mid August.



CPTAC data portal migration: discuss where we stand and what steps are needed to make the migration happen.  Same presentation as on Monday.

Action items

  •  
  • No labels