Date
Attendees
| Committee Member | Present | Absent |
|---|---|---|
| X | ||
| X | ||
| Elaine Ostrander | ||
| Deborah Knapp | X | |
| Jeff Trent | ||
| Dawn Duval | ||
| Amy Leblanc | X | |
| Heather Gardner | X | |
| Cheryl London | X | |
| Christina Mazcko | X | |
| Paula Jacobs | ||
| Renee Chambers | ||
| Shaying Zhao | ||
| William Hendricks | ||
| Sunetra Das |
Outstanding Action Items
- Cheryl London will take the lead on compiling and reconciling references using EndNote
- Toby to reach out to Connie about extending invite to new PRECINCT members.
Agenda
| Agenda Item | Who | Notes |
|---|---|---|
| BPSC Review Article: Tools & Resources for the Canine Genomic Landscape | Group Discussion |
Section | Author(s) |
Intro | Dawn Duval, Cheryl London, Heather Gardner |
CanFam Genomes: Overview | Elaine Ostrander, Gina Kuffel |
CanFam Genomes: Challenges | Elaine Ostrander, Gina Kuffel |
Data Repositories | Gina Kuffel |
Cloud Resources | Gina Kuffel |
Available Tools: Standard Pipelines | Shaying Zhao |
Available Tools: MHC genotyping | Shaying Zhao |
Available Tools: Breed Prediction Pipeline | Shaying Zhao |
Emerging Technologies & Resources: Single Cell | Debbie Knapp, Cheryl London, Heather Gardner |
Emerging Technologies & Resources: Spatial Transcriptomics | Debbie Knapp, Cheryl London, Heather Gardner |
Emerging Technologies & Resources: nCounter Assay | Debbie Knapp, Cheryl London, Heather Gardner |
Emerging Technologies & Resources: Dependency Mapping | Debbie Knapp, Cheryl London, Heather Gardner |
Emerging Technologies & Resources: Liquid Biopsy | Debbie Knapp, Cheryl London, Heather Gardner |
Supplementary Materials: KPR de novo assembler and genotyper | Shaying Zhao |
Supplementary Materials: Breed prediction and validation pipeline | Shaying Zhao |
Meeting Minutes (Not Verbatim)
CL - In the process of editing, will plan to complete by Thanksgiving.
TH - I plan to edit the first and second week of December.
PJ - Please send to me once Cheryl and Toby have completed virtual edits.
TH - Next ICDC TO will need to be in place by June, there were not many RFI responses, however the focus groups provided sufficient information.
CL - Digital pathology will be important for spatial transcriptomics. We have path on all cases tied to the U01s.Â
PJ - The TCIA accepts digital pathology from canine and humans.
TH - Give members an appropriate time to leave committee if no longer available/interested.
Action items
