NIH | National Cancer Institute | NCI Wiki  

Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update
Request from LRbanner referencing EVS Explorer

If NCI Terms Browser down, banner should point people to EVS Explorer.

Will be in current tag, next release

NCI-RITM0497500Planning Discussion with Systems about migrating to Java 17
  • Meeting planned Fri, Jan19 11AM
  • Tomcat 8.5 EoL this year?
  • ecj is Tomcat8 jar and needs updated to work with Java 17. 
  • Who is overseeing the OS/Tomcat upgrade? How to communicate the increased risk? Shiv Kadarthi (sp?)
  • Tracy to create Dev Java 17 ticket
NCI-RITM0499380 add jconsole access on PROD to debug performance issues
Posted latest access errors to ticket, trying to get needed access

SYSTEMS
EVS transition to virtual machines

STATUS: We are waiting to switch STAGE from on prem to VM once PROD server is ready; so we can switch both PROD and STAGE at same time . 

  • New rules from Systems Engineering has resulted in additional documentation and testing.
  • Jenkins setup created, still adjusting it.



LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 215 (Dec 8- Jan 2) - LINK TO Jira Spring 215

Current Sprint  - Sprint 216 ()

For the month of December 2023, the Mayo group is planning to:

  • Complete Report Exporter banner


  • Improvements, Refactoring Code Debt, Feature development:
  • Examine feasibility of Java 17
    • BACKGROUND: a small number of LexEVS components (aka dependencies) are being phased off of java 8 (or are no longer being supported on java 8).  We ideally want to use a current version of those components (dependencies). IF the current version of that component is only supported on Java 14 or later (just as an example), then we would have to migrate the ENTIRE LexEVS stack to Java 14 or later. (Note that the current Java version is Java 21 LTS, and the most popular non-LTS version is Java 14). So there is a risk that a vulnerability is found in the older version of the component/dependency and we would have to either migrate everything quickly to a new version, or not use that component (which might not be possible), or shutdown LexEVS entirely. Note that there are certain versions of Java which are "long-term support" versions - meaning that they will be supported for several years beyond non-LTS versions. LTS versions are Java 8,  Java 11, Java 17, and Java 21.
    • OBJECTIVE: find out what would it be like to upgrade from Java 8 LTS to Java 17 LTS.  How hard would it be? How long might it take?
    • LEXEVS-5373 Investigate Upgrade of NCIt Browser to Java 17
  • DataDog


Technical Debt remediation

LexEVS Code Debt Refactoring

  • Coding complete on lexevs services - except for isolated dependencies
    • Java 17 work ready for NCit Browser 
  • CTS2 - Working to update Jakarta - linked to Java17
  • Dependabot notice to update jQuery - ready for Dev


Report Exporter
  • Banner changes being implemented  - in progress
    • May be moot with centralized approach
    • Systems did implement config change but ineffective. Requested roll back
  • Working on templating - Need user feedback for phase 2
    • Demo feedback implemented
    • Need to make more dynamic - load values from external source - work started
    • Will need feedback from users to provide template requirements
  • Wait time indicator work has begun
  • Work with Mark to setup communications with Lori

Feedback form

  • Need to research approval procedure, Mark was asked to reach out to OCPL
  • Andrew supplied copy of survey form from RE

ACTION: (from Lyuba) We don't have any indication that the tool is working. Can we get an indicator, like a spinning circle, etc.


Security


Statistics Dashboard

OBJECTIVE 
Complete Migration of Statistics Dashboard from SumoLogic to DataDog by March 2024.

STATUS

Status meeting has been scheduled for every Friday
Request for additional info in the logs sent by Manish.  Tracy will forward. 

ACTIONS

  • Check on status of collectors on other servers than evsexplore - Tracy


Comparison/Mapping Tool

On Hold

AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences


Mayo Team - 

MSC - 

Leidos - 

QA - 

Gov - 



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group


DATA UPDATES
Data
  • Monthlies being tested on Stage
  • Prod tomorrow
  • ChEBI data issue - ticket entered

BROWSER UPDATES

Browser
  • 2 tags in QA, lower priority 
  • Kim: Thinks issue will be finding right Tomcat/Java 17 combination



QA UPDATES

QA
  • Data testing Monthly
  • 1.9 RestAPI/Explore on QA
    • Progression completed
    • Rest Regression in progress - target completion expected by Friday
    • Explore - testing fixes
  • Browser testing expected next week

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 


Mark Benson TPM Update
  • No issues

LexEVS Technical Debt Progress


Technical Debt Related Update

Estimated Effort

Status

Report Exporter vulnerabilities - design4 days
Report Exporter vulnerabilities - implementation5 days
Unit testing2 days
QA2 days
Deployment5 days (elapsed)

Vocabularies Slated for Production

  Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt23.12d12/27/2023yes01/05/2401/09/24
NCIt-HGNCNCIt-HGNCJan202412/27/2023yes01/05/2401/09/24
SwissProtSwissProtJan202412/27/2023yes01/05/2401/09/24
ChEBIChEBIv22801/09/24yes01/12/2401/17/24
HGNCHGNCJan202401/09/24yes01/12/2401/17/24

QA Schedule and Status

see  QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent Report Exporter Related Bugs and Features 

|

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent LexEVS Related Bugs and Features 

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent CTS2 Service Related Issues 

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
Loading...
Refresh


ASSIGNED ACTION ITEMS

DescriptionDue dateAssigneeTask appears on
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.11
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
25 Oct 2023Safran, Tracy (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Schedule followup meeting
LexEVS Meeting Minutes - 2024.04.03
  • Tracy to check with team
LexEVS Meeting Minutes - 2024.03.27
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.21
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.14
Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2024.02.07
  •  Short meeting to determine audience for app
LexEVS Meeting Minutes - 2024.02.07
  • Mark to reach out by Friday if we don't hear back
LexEVS Meeting Minutes - 2024.01.31
  • Mark to schedule meeting with editors for feedback; Mark has sent out poll for times
LexEVS Meeting Minutes - 2024.01.31
  • Check on status of collectors on other servers than evsexplore - Tracy
LexEVS Meeting Minutes - 2024.01.31



  • No labels