NIH | National Cancer Institute | NCI Wiki  

Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update
Request from LRbanner referencing EVS Explorer

If NCI Terms Browser down, banner should point people to EVS Explorer.

Will put in a request for STAGE after Swathi does testing

NCI-RITM0497500Planning Discussion with Systems about migrating to Java 17

< on hold >

NCI-RITM046506 MEME URI not working, hostname usable as workaround
NCI-RITM0508076EVS PROD OUTAGE
Jason, Scott, Chao are debugging with Eric Gavua;
It just came back up! It took over 4 attempts to restart?!

SYSTEMS
EVS transition to virtual machines

STATUS:We need to have a decision about how to handle PROD VM server not being ready at the moment.

We were going to wait to switch STAGE from on prem to VM once PROD server is ready; so we can switch both PROD and STAGE at same time . 

So how do we handle the OS conversion then? Do we push for PROD VM to be made? Wait to build the VM after we convert STAGE and then PROD to Oracle Linux 7?

  • DECIDED: conversion first, then transition to VMs
  • we are probably a ways from PROD VM; STAGE VM saw issues pop up during transition



LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 216 (Jan 9 - Feb 2) -

Current Sprint  - Sprint 217 (Feb 2 - Mar 2) - Sprint 217

For the month of February 2024

Technical Debt remediation

LexEVS Code Debt Refactoring - Java 17 refactoring currently is on hold.

OS Updates

11 machines were converted today. We are in the process of testing them.

Jason will ping West Coast Informatics about testing.

Discussion about smoke and functional testing on DEV with QA

Jason highly recommended looking at CTS2 (high priority).

Report Exporter
  • Working on templating - on pause for the moment
  • Wait time indicator work is being tested, made some adjustments and continuing testing;
  •  Short meeting to determine audience for app


Security


Statistics Dashboard

OBJECTIVE 
Complete Migration of Statistics Dashboard from SumoLogic to DataDog by March 2024.

STATUS

  • S3 bucket has been created, but is blocked by next step of installing a Datadog / AWS integration. 

ACTIONS

  • Benson, Mark (NIH/NCI) [C] to create S3 bucket - under 'EVSTOOLS'
    • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
Comparison/Mapping Tool

On Hold

AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences


Mayo Team - Tracy out week of Feb12

MSC - 

Leidos - Mark out morning on Feb 16; will be in at noon 

QA - 

Gov - 



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group

EVS PROD Outage

Scott made the point about needing metrics for server performance, resources when issues/outages occur.


DATA UPDATES
Data
The latest Thesaurus 24.01e has been deployed to PROD. Ready to be verfied.

BROWSER UPDATES

Browser
  • A proposal for handling the Contact Us SPAM is being drafted.
  • 2 tags ready for STAGE, a request will be put in today

QA UPDATES

QA

24.01e data deployment on STAGE.

Progression and sanity for tags on NCIm on QA (2 tickets)



TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Mark Benson TPM Update

OS Conversion Testing

Server Name

Tier

Proj

Tested

nciws-d2020-cDEVReport Writer 2

✅ - JL

ncias-d2021-cDEVData processing

(testing by WC)

nciws-d1081-cDEVEVS Explore

✅ - JL

ncias-d2174-cDEVEVSRESTAPI

✅ - JL

ncias-d2175-cDEVStardog

✅ - JL

nciws-d2002-vDEVEVS Legacy Applications

(testing...)

nciws-d2244-cDEVReport Exporter

(testing...)

nciws-d699-vDEVProtege DEV server

(testing...)

https://gdc-mvs-dev.nci.nih.gov/gdc/
nciws-d914-v
DEVGDC MVS

(testing, FM)

https://sip-dev.semantics.cancer.gov/evssip/
nciws-d2139-v?
DEVEVS SIP

(testing, CZ)

nciws-d2391-cDEV(meme-dev) server

(testing, by WC)

Vocabularies Slated for Production

  Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt23.12d12/27/2023yes01/05/2401/09/24
NCIt-HGNCNCIt-HGNCJan202412/27/2023yes01/05/2401/09/24
SwissProtSwissProtJan202412/27/2023yes01/05/2401/09/24
ChEBIChEBIv22801/09/24yes01/12/2401/17/24
HGNCHGNCJan202401/09/24yes01/12/2401/17/24

QA Schedule and Status

see  QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent Report Exporter Related Bugs and Features 

|

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent LexEVS Related Bugs and Features 

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent CTS2 Service Related Issues 

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
Loading...
Refresh


ASSIGNED ACTION ITEMS

DescriptionDue dateAssigneeTask appears on
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.11
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
25 Oct 2023Safran, Tracy (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Schedule followup meeting
LexEVS Meeting Minutes - 2024.04.03
  • Tracy to check with team
LexEVS Meeting Minutes - 2024.03.27
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.21
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.14
Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2024.02.07
  •  Short meeting to determine audience for app
LexEVS Meeting Minutes - 2024.02.07
  • Mark to reach out by Friday if we don't hear back
LexEVS Meeting Minutes - 2024.01.31
  • Mark to schedule meeting with editors for feedback; Mark has sent out poll for times
LexEVS Meeting Minutes - 2024.01.31
  • Check on status of collectors on other servers than evsexplore - Tracy
LexEVS Meeting Minutes - 2024.01.31



  • No labels