NIH | National Cancer Institute | NCI Wiki  

Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update

NCI-INC0805939
NCI-INC0805936

NCI-INC0816847

CTS2 down on Dev and QA
Met with Systems team to debug on Tu, Feb 27.
Ticket entered to install visual VM to track stack on Dev

NCI-RITM0512149

Security consult about IP traffic to Prod
Asked for dynamic IP throttling

 

DataDog servers being implemented one by one

EVS transition to virtual machines

STATUS:

  • Prod2 server up and running - being tested
    • Reported issues with value set exports - comparable to old Prod
    • Kim checked on mappings and sent solution
  • Tomcat 8.5 reached EoL - needing new stacks for all tiers
    • Oracles OES8, Tomcat 10, Java 17
    • Met with Systems Tuesday, will check with them on progress no later than next Tuesday
    • Options
      • Go to Tomcat 9 first then carefully go to Tomcat 10
      • Tomcat 10 would require a Java upgrade, 9 can stay on Java 8
      • OES8 could come later
  • Schedule followup meeting - Tracy



LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 218 (Mar 5 - Apr 5) -

Current Sprint  - Sprint 219 (Apr 5 - May 06) - Sprint 219

For the month of April 2024

  • Report Exporter

  • Improvements, Refactoring Code Debt, Feature development:
  • Implementation of Java 17
  • DataDog
  • NCI Terms Browser
    • NCITERM-954 Merge current dev branch to NCIt Browser Java 17 branch
    • NCITERM-956 Remove Contact Us form and replace with comment
Technical Debt remediation

LexEVS Code Debt Refactoring - Java 17 refactoring currently is in progress

  • Tomcat 9 partially installed on Dev.  
    • Can move forward now


OS Updates
  • QA conversions starting - Dev, QA, Stage updated for LexEVS. 
    • Waiting on Prod new server
  • Protege and SIP completed in all tiers
Report Exporter
  • Working on templating starting
    • Doing phase 1 - moved to QA
    • In progress: implement file-based template storage
  • Wait time indicator on Stage - qa completed
    • Request in to move to Prod
    • Release notes written
  • Checking Tomcat version - already on 9


Security

Tomcat 8.5 is EOL - risk if new vulnerability discovered

Statistics Dashboard

OBJECTIVE 
Complete Migration of Statistics Dashboard from SumoLogic to DataDog by March 2024.  Hard end in April (ish) - possibly end of June

STATUS

  • S3 bucket has been created
    • Working on integration
    • successfully tested refresh
    • need to operationalize
  • Collectors installed on all servers 
    • Apache config happening server by server
  • Apache logs being pulled in for p805
    • evs.cancer.gov now working
    • Need all other logs configured - check to see if configured
      • EVS RestAPI
      • EVS Explore
      • Report Exporter
  • New Stage and Prod servers need to be requested

Link: Sharepoint Project Task Checklist

Comparison/Mapping Tool

On Hold

  • Systems asking if we still want to maintain the dev server for EVSCompare
  • Would need to update to Oracle 7 - ticket entered
  • Would need Tomcat and Java updated
AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences


Mayo Team - Scott vacation late May

MSC - 

Leidos - 

QA - 

Gov - Mark PTO Apr 23 → May 7th, back on 8th.  Lyubov out until Friday



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group

Discussion around Tomcat 9

Java 17 - possibly increases performance


DATA UPDATES
Data
  • Meta 202402 on production
  • NCIt 24.03d being processed
    • Issues on QA report - lint run
    • Lint SOP being written
    • Processing delayed due to Meta, lint extended time in app as well

BROWSER UPDATES

Browser

QA UPDATES

QA
  • Finished Meta data on Stage/Prod 202402
  • Report Exporter - 
    • RC8 on Prod, being tested
    • RC9 on QA, being tested
  • NCIt Browser history fix tested last week.
    • New feature added yesterday so testing restarted

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Mark Benson TPM Update



Vocabularies Slated for Production

  Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt24.02d02/27/2024yes03/05/2403/09/24
NCIt-HGNCNCIt-HGNCFeb202402/27/2024yes03/05/2403/09/24
SwissProtSwissProtFeb202402/27/2024yes03/05/2403/09/24
CanMedCanMedFeb202403/09/24yes03/12/2403/17/24
ChEBIChEBIv23103/09/24yes03/12/2403/17/24
HGNCHGNCMar202403/09/24yes03/12/2403/17/24

QA Schedule and Status

see  QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent Report Exporter Related Bugs and Features 

|

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent LexEVS Related Bugs and Features 

Key Summary T Created Reporter P Status
Loading...
Refresh

Recent CTS2 Service Related Issues 

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
Loading...
Refresh


ASSIGNED ACTION ITEMS

DescriptionDue dateAssigneeTask appears on
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.11
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
  • Schedule followup meeting
LexEVS Meeting Minutes - 2024.04.03
  • Tracy to check with team
LexEVS Meeting Minutes - 2024.03.27
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.21
  • will need additional work to install Datadog / AWS integration. working with Cyrus and Systems.
LexEVS Meeting Minutes - 2024.02.14
Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2024.02.07
  •  Short meeting to determine audience for app
LexEVS Meeting Minutes - 2024.02.07
  • Mark to reach out by Friday if we don't hear back
LexEVS Meeting Minutes - 2024.01.31
  • Mark to schedule meeting with editors for feedback; Mark has sent out poll for times
LexEVS Meeting Minutes - 2024.01.31
  • Check on status of collectors on other servers than evsexplore - Tracy
LexEVS Meeting Minutes - 2024.01.31
  • Scott and Kim to set up consult about Spam
LexEVS Meeting Minutes - 2024.01.24
  • Mark to follow up
LexEVS Meeting Minutes - 2024.01.24
  • Mark to schedule meeting with editors for feedback
LexEVS Meeting Minutes - 2024.01.24
  • Check on status of collectors on other servers than evsexplore - Tracy
LexEVS Meeting Minutes - 2024.01.24



  • No labels