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Agenda

EVS Discussion

Open System Tickets

Ticket Description Actions, Update

NCI-INC0805939
NCI-INC0805936

NCI-INC0816847

CTS2 down on Dev and QA
Met with Systems team to debug on Tu, Feb 27.
Ticket entered to install visual VM to track stack on Dev

NCI-RITM0512149

Security consult about IP traffic to Prod
Asked for dynamic IP throttling

 

DataDog servers being implemented one by one

EVS transition to virtual machines

STATUS:

  • Prod2 server up and running - completed tested
    • Reported issues with value set exports - comparable to old Prod
    • Mappings fixed
  • Tomcat 8.5 reached EoL - needing new stacks for all tiers
    • Oracles OES8, Tomcat 10, Java 17
    • Met with Systems Tuesday, will check with them on progress no later than next Tuesday
    • Options
      • Tomcat 9 and Java 17 installed on Dev
      • Working on evs-jenkins today at 4
      • OES8 could come later
  • Stage 2 - all upgrade
  • Prod 2 - all upgrade



LEXEVS UPDATES

Monthly Planning and Focus

Completed Sprint - Sprint 218 (Mar 5 - Apr 5) -

Current Sprint  - Sprint 219 (Apr 5 - May 06) - Sprint 219

For the month of April 2024

  • Report Exporter

  • Improvements, Refactoring Code Debt, Feature development:
  • Implementation of Java 17
  • DataDog
  • NCI Terms Browser
    • NCITERM-954 Merge current dev branch to NCIt Browser Java 17 branch
    • NCITERM-956 Remove Contact Us form and replace with comment
Technical Debt remediation

LexEVS Code Debt Refactoring - Java 17 refactoring currently is in progress

  • Tomcat 9 installed on Dev.  
    • Working on Jenkins jobs


OS Updates
  • Done on all tiers
  • Protege and SIP completed in all tiers
  • Tracy - check on any remaining tasks
Report Exporter
  • Working on templating starting
    • Doing phase 1 - moved to Stage
      • Code not being accepted on search - same tag as QA
    • In progress: implement file-based template storage


Security

Tomcat 8.5 is EOL - risk if new vulnerability discovered

  • Oracle Java 8 - still being used on DataQA
    • Still present on other servers, in $PATH
    • Tracy to put in tickets

Statistics Dashboard

OBJECTIVE 
Complete Migration of Statistics Dashboard from SumoLogic to DataDog by March 2024.  Hard end in April (ish) - possibly end of June

STATUS

  • S3 bucket has been created
    • Working on integration
    • successfully tested refresh
    • need to operationalize - testing going on today
  • Collectors installed on all servers 
    • Apache config complete
  • Apache logs being pulled in for p805
    • evs.cancer.gov now working
      • Working on queries
      • Cyrus -  needs to implement "facet"
  • New Stage2 and Prod2 servers need to be requested - Tracy

Link: Sharepoint Project Task Checklist

Comparison/Mapping Tool

On Hold

  • Systems asking if we still want to maintain the dev server for EVSCompare
  • Would need to update to Oracle 7 - ticket entered
  • Would need Tomcat and Java updated
AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences


Mayo Team - Scott off May 6-7 and working vacation late May.

MSC - 

Leidos - 

QA - 

Gov - Mark PTO Apr 23 → May 7th, back on 8th. 



EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group
  • Discussed server migration
  • Metathesaurus - Java 17
  • Java 8 still present
  • Data refresh Dev and QA - after current processing complete


DATA UPDATES
Data
  • NCIt  on Prod
  • Working on monthlies - requested for Stage
  • Next week new NCIt

BROWSER UPDATES

Browser
  • 2.22 release requested for Stage
  • OS - Protege Prod completed.
  • p793 May 1, 6PM
  • Question about FTP data refresh - Jenkins job
    • Cuong often works on it.

QA UPDATES

QA
  • completed Prog and San 2.22 on QA
  • NCIt 24.03 completed on Stage and Prod
  • Report Exporter 2.0.1 issue on Stage - Jira-514

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Mark Benson TPM UpdateCreating list of contacts and such for leave


Vocabularies Slated for Production

  Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt24.02d02/27/2024yes03/05/2403/09/24
NCIt-HGNCNCIt-HGNCFeb202402/27/2024yes03/05/2403/09/24
SwissProtSwissProtFeb202402/27/2024yes03/05/2403/09/24
CanMedCanMedFeb202403/09/24yes03/12/2403/17/24
ChEBIChEBIv23103/09/24yes03/12/2403/17/24
HGNCHGNCMar202403/09/24yes03/12/2403/17/24

QA Schedule and Status

see  QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCIcheck mark button 

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]check mark button 
Lucas, Jason RNIH/NCI [C]check mark button 
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]<checked in>
Solie, ChuckNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]check mark button
Singh, ItendraNIH/NCI [C]check mark button
Zhang, ChaoNIH/NCI [C]check mark button
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]check mark button
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features 

Key Summary T Created Reporter P Status
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Recent Report Exporter Related Bugs and Features 

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Key Summary T Created Reporter P Status
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Recent LexEVS Related Bugs and Features 

Key Summary T Created Reporter P Status
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Recent CTS2 Service Related Issues 

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
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ASSIGNED ACTION ITEMS

DescriptionDue dateAssigneeTask appears on
09 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.25
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.18
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.11
  • Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on  
11 Oct 2023Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2023.10.04
Benson, Mark (NIH/NCI) [C]LexEVS Meeting Minutes - 2024.09.11
  • Get the Report ready and submitted this week
LexEVS Meeting Minutes - 2024.09.04
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.09.04
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.08.28
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.08.21
  • Mark to follow up on ticket status/ subproject structure
LexEVS Meeting Minutes - 2024.08.14
  • Tracy to ping for status
LexEVS Meeting Minutes - 2024.08.14
  • Tracy to send invite to systems to discuss migration in this meeting
LexEVS Meeting Minutes - 2024.07.17
  • Temporarily block Singapore traffic
LexEVS Meeting Minutes - 2024.06.05
  • Tracy to request shut down of instance to save resources
LexEVS Meeting Minutes - 2024.06.05
  • Temporarily block Singapore traffic
LexEVS Meeting Minutes - 2024.05.29
  • Tracy to request shut down
LexEVS Meeting Minutes - 2024.05.29
  • Check status of termform and Tomcat9
LexEVS Meeting Minutes - 2024.05.15



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