This appendix describes platforms supported by caIntegrator.
Platform Name |
Data Type |
Manufacturer |
Species |
Platform Loaded? |
Study Deployed? |
Viewable in IGV? |
|---|---|---|---|---|---|---|
Agilent022522 |
copy number |
Agilent |
Human |
Yes |
Yes |
Yes |
G4502A_07_1 |
expression |
Agilent |
Human |
Yes |
Yes |
Yes |
G4502A_07_2 |
expression |
Agilent |
Human |
Yes |
Yes |
Yes |
G4502A_07_3 |
expression |
Agilent |
Human |
Yes |
Yes |
Yes |
HG_U95Av2 |
expression |
Affymetrix |
Human |
Yes |
Yes |
Yes |
HG_U95B |
expression |
Affymetrix |
Human |
Yes |
No |
Yes |
HG_U95C |
expression |
Affymetrix |
Human |
Yes |
No |
Yes |
HG_U95D |
expression |
Affymetrix |
Human |
Yes |
No |
Yes |
HG-CGH-244A |
copy number |
Agilent |
Human |
Yes |
Yes |
Yes |
HG-U133_Plus_2 |
expression |
Affymetrix |
Human |
Yes |
Yes |
Yes |
HG-U133A |
expression |
Affymetrix |
Human |
Yes |
Yes |
Yes |
HT_HG-U133A |
expression |
Affymetrix |
Human |
Yes |
Yes |
Yes |
HG-U133B |
expression |
Affymetrix |
Human |
Yes |
No |
Yes |
mapping 100k (Mapping50K_Hind240, Mapping50K_Xba240) |
copy number |
Affymetrix |
Human |
Yes |
Yes |
Yes |
mapping 500k (Mapping250K_Nsp, Mapping250K_Sty) |
copy number |
Affymetrix |
Human |
Yes |
Yes |
Yes |
Mouse430_2 |
expression |
Affymetrix |
Mouse |
Yes |
Yes |
No |
Mouse430A_2 |
expression |
Affymetrix |
Mouse |
Yes |
No |
No |
Drosophila Genome 2.0 |
expression |
Affymetrix |
Drosophila |
Yes |
Yes |
No |
C. elegans Genome |
expression |
Affymetrix |
C. elegans |
Yes |
Yes |
No |
Zebrafish Genome |
expression |
Affymetrix |
Zebrafish |
Yes |
Yes |
No |
HG-CGH-2x415K |
copy number |
Agilent |
Human |
Yes |
Yes |
Yes |
