Product Changes

• New Feature: Removed convenience methods for codeToName
  CF#15222
• New Feature: Update to work with SDK 4.1
  CF#15942
• New Feature: Javadocs should open in new window
  CF#16686
• New Feature: LexBIG GUI launch support for OSX environment
  CF#16989
• New Feature: Import RRF Representation of Relationship Groups
  CF#17019
• New Feature: CodingSchemeId not present in exported LexGrid XML
  CF#17183
• New Feature: OWL Loader Enhancements
  CF#17233
• New Feature: Finalize BDA for 5.0 release
  CF#17508
• New Feature: Model revisions & readiness for Silver/Gold Compatibility
  (scope modified & approved 1/14/09)
  CF#17509
• New Feature: 5.0 Data Services/SDK
  CF#17511
• New Feature: 2009/01 model changes
  (please see Gforge tracker for more detail on the nature of the changes and further descriptions)
  CF#18449
• New Feature: Add 'namespace' to the Lucene Indexes
  CF#19883
• New Feature: Change name of ProtegeFramesLoader to RadlexProtegeFramesLoader
  CF#19888
• New Feature: Rename getParentsOf() and getChildrenOf()
  CF#19889
• New Feature: Support query of non-concept entities
  CF#19890
• New Feature: Creation of XSL stylesheets for transformation of LexBig data to n-1 LexBig versions
  CF#20043

• Bug: Implement getAssociation for EVS API web service
  CF#15091
• Bug: Two constructors create ConceptReferenceList methods throw exceptions
  CF#15976
• Bug: Example to dump/query auxiliary metadata
  CF#16508
• Bug: Better error handling for invalid search criteria in http interface
  CF#16579
• Bug: Users should have the ability to request Search results be sorted
  CF#17161
• Bug: Remove JUnit test dependency on 'Automobiles' vocab for LexEVS Grid Services
  CF#17405
• Bug: Change -nf option to -fe (fail on error)
  CF#17410
• Bug: EntityDescription not assigned to the NCI PT (rdfs:label) using Scrubber output
  CF#17421
• Bug: LexBIG History 'getEditActionList' Error
  CF#19411
• Bug: Owl loader fails when duplicate objectProperty is loaded from two namespaces
  CF#19462
• Bug: Supported Coding Scheme default is set even when coding scheme name is specified in manifest
  CF#19484
• Bug: Applying manifest with only an association forward/reverse name receives 'String index out of range' exception.
  CF#19485
• Bug: CodedNodeGraph not resolving across ontology boundary
  CF#19492
• Bug: Entity 'isActive' not being indexed correctly on Postgresql and MS Access
  CF#19573
• Bug: Problem applying supportedNamespace
  CF#19586
• Bug: Unable to load NCIT v9.01d and other large ontologies
  CF#19600
• Bug: Equivalent CodingScheme on SupportedNamespace default value not being set correctly.
  CF#19628
• Bug: Relationships not resolving that contain a Namespace that has a localId that does not match the CodingScheme.
  CF#19629
• Bug: CodingSchemeProperties not being persisted to the database.
  CF#19702
• Bug: LexBIG property behavior does not match EA model
  CF#19716
• Bug: Transitivity Table not being built
  CF#19741
• Bug: Supported Hierarchies not being fully populated in 2.3 - 5.0 Compatibility Test
  CF#19864
• Bug: LexBIG 2.3 xml import command fails
  CF#19900
• Bug: Metathesaurus history accessing wrong column name
  CF#20032
• Bug: Owl loader ClassCast Exception while loading OWLObjectProperties
  CF#20037
• Bug: Lucene Indexer fails with empty EntityDescription
  CF#20068
• Bug: EMF loaders fail while inserting CodingScheme Properties
  CF#20070
• Bug: Exception entering null into BIGINT column on PostgreSQL database.
  CF#20193
• Bug: Blank description in the Service Context on grid portal
  CF#20419

Important Remaining Issues

Make use of logging consistent - elminate system out. We will address this if time permits
CF#14971
The NCI_Thesaurus association Has_Salt_Form and Has_Free_Acid_Or_Base needs reverse name. We will address this if time permits.
CF#15975
gov.nih.nci.evs.domain.Atom.getLUI does not return value. We will address this if time permits.
CF#15667
Serializer Exception on org.apach.lucene.search.regenex. We will address this if time permits.
CF#16678
Results not Deserializing Properly when using QueryModifiers on CQL Queries
CF#19406
Root concepts found by ListHierarchyMetaBySource when running against NCI MetaThesaurus with source set to NCI are different from root concepts in NCI Thesaurus.
CF#20354

Fixed Since Last Release

Bugs

21567 - ResourceManager cache not Thread-safe
21923 - Connection Leak on SQLImplementedMethods 'mapToCodingSchemeName'
22355 - LexGrid XML exporter not writing correctly if there are two Enitities with the same code but different namespace
22743 - Unable to resolve GO and CTCAE hierarchy roots.
23278 - CodedNodeGraph restrictToAssociations fails with Qualifier containing null value
23359 - Supported Attributes missing from 5.1 NCI Thesaurus 09.08e
23456 - Loaded MedDRA - unable to see Code System Details
23755 - Semantic_Type Property not being loaded by Meta Loader
23761 - Delay advancing a ResolvedConceptReferencesIterator in Distributred mode
23858 - Duplicate results returned on CodedNodeSet resolve
24148 - PathToRoot over-protecting for looping hierarchy paths

Feature Requests

21716 - Add data from MRSAT file to NCI Meta data
21717 - MRSAB conifgured to load for NCI Meta data
21718 - MRREL data for NCi Meta - needs more data loaded
21719 - Load MRRANK data for NCI Meta
21721 - Add some additional data from MRHIER
21722 - Make sure MRDOC data for NCI Meta is loaded
21723 - Add more data from MRDEF file for NCI Meta
21724 - Add data from MRCONSO file to NCI Meta data
21849 - Add an algorithm for supporting case-insensitive substring search.
21850 - Add a search algorithm for supporting case-insensitive substring search with an additional spelling-error tolerant feature.
21879 - Improve error messages (e.g., CNS.resolve, CNS.resolveToList, CNG.resolveToList)
21881 - Improve ResolvedConceptReferencesIterator performance by reducing client-server network traffic in distributed mode.
21882 - LexEVS 5.1 Value Domain Support
21976 - Improve LexEVS Loading Framework
21980 - Optimize Lucene code to improve search performance
21982 - Implement a server side sort to improve performance
22006 - General SQL optimization
22565 - Add special character search
22893 - Add asserted relations into the transitive table
23053 - Load TUI as a Property in UMLS loader
23071 - Allow multiple CUI Properties per UMLS Entity

Important Remaining Issues

Deferred/Deprecated Items

Bugs

19406 - Results not Deserializing Properly when using QueryModifiers on CQL Queries
20590 - Not all concept status property values are accessible through the API.
20653 - Anonymous class hierarchy with unions not showing up correctly.
20661 - Ontology for Genetic Interval hierarchy does not match up Protege
20665 - ECG Ontology missing Description, Date, Source and Creator fields
20684 - Can not compute root node for OBI version v1.0.1423
20797 - Strict Owl Processing
23770 - OBI.owl loading - missing property "has curation status" for concepts
23806 - OBI.owl loading - Incorrect infromation as value to the property "imported from"

Feature Requests

21720 - Load all MRMAP data
22877 - MedDRA loading into LexEVS
22887 - BDA Certification
23324 - Option to include or exclude anonymous concepts.
23598 - REST API Features
23611 - LexEVS Value Domain Support to include persistance of resolved value domain content
23643 - Java 1.6

CORE Product Dependencies

Refer to the CORE Product Dependency Matrix for the caCORE SDK and other software technologies on which this release of this product relies.

Release History