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Contents

National Cancer Institute Center for Bioinformatics
Product LexEVS 5.0 Release Notes
May 08 2009

Product Changes

  • New Feature: Removed convenience methods for codeToName
    CF#15222
  • New Feature: Update to work with SDK 4.1
    CF#15942
  • New Feature: Javadocs should open in new window
    CF#16686
  • New Feature: LexBIG GUI launch support for OSX environment
    CF#16989
  • New Feature: Import RRF Representation of Relationship Groups
    CF#17019
  • New Feature: CodingSchemeId not present in exported LexGrid XML
    CF#17183
  • New Feature: OWL Loader Enhancements
    CF#17233
  • New Feature: Finalize BDA for 5.0 release
    CF#17508
  • New Feature: Model revisions & readiness for Silver/Gold Compatibility
    (scope modified & approved 1/14/09)
    CF#17509
  • New Feature: 5.0 Data Services/SDK
    CF#17511
  • New Feature: 2009/01 model changes
    (please see Gforge tracker for more detail on the nature of the changes and further descriptions)
    CF#18449
  • New Feature: Add 'namespace' to the Lucene Indexes
    CF#19883
  • New Feature: Change name of ProtegeFramesLoader to RadlexProtegeFramesLoader
    CF#19888
  • New Feature: Rename getParentsOf() and getChildrenOf()
    CF#19889
  • New Feature: Support query of non-concept entities
    CF#19890
  • New Feature: Creation of XSL stylesheets for transformation of LexBig data to n-1 LexBig versions
    CF#20043
  • Bug: Implement getAssociation for EVS API web service
    CF#15091
  • Bug: Two constructors create ConceptReferenceList methods throw exceptions
    CF#15976
  • Bug: Example to dump/query auxiliary metadata
    CF#16508
  • Bug: Better error handling for invalid search criteria in http interface
    CF#16579
  • Bug: Users should have the ability to request Search results be sorted
    CF#17161
  • Bug: Remove JUnit test dependency on 'Automobiles' vocab for LexEVS Grid Services
    CF#17405
  • Bug: Change -nf option to -fe (fail on error)
    CF#17410
  • Bug: EntityDescription not assigned to the NCI PT (rdfs:label) using Scrubber output
    CF#17421
  • Bug: LexBIG History 'getEditActionList' Error
    CF#19411
  • Bug: Owl loader fails when duplicate objectProperty is loaded from two namespaces
    CF#19462
  • Bug: Supported Coding Scheme default is set even when coding scheme name is specified in manifest
    CF#19484
  • Bug: Applying manifest with only an association forward/reverse name receives 'String index out of range' exception.
    CF#19485
  • Bug: CodedNodeGraph not resolving across ontology boundary
    CF#19492
  • Bug: Entity 'isActive' not being indexed correctly on Postgresql and MS Access
    CF#19573
  • Bug: Problem applying supportedNamespace
    CF#19586
  • Bug: Unable to load NCIT v9.01d and other large ontologies
    CF#19600
  • Bug: Equivalent CodingScheme on SupportedNamespace default value not being set correctly.
    CF#19628
  • Bug: Relationships not resolving that contain a Namespace that has a localId that does not match the CodingScheme.
    CF#19629
  • Bug: CodingSchemeProperties not being persisted to the database.
    CF#19702
  • Bug: LexBIG property behavior does not match EA model
    CF#19716
  • Bug: Transitivity Table not being built
    CF#19741
  • Bug: Supported Hierarchies not being fully populated in 2.3 - 5.0 Compatibility Test
    CF#19864
  • Bug: LexBIG 2.3 xml import command fails
    CF#19900
  • Bug: Metathesaurus history accessing wrong column name
    CF#20032
  • Bug: Owl loader ClassCast Exception while loading OWLObjectProperties
    CF#20037
  • Bug: Lucene Indexer fails with empty EntityDescription
    CF#20068
  • Bug: EMF loaders fail while inserting CodingScheme Properties
    CF#20070
  • Bug: Exception entering null into BIGINT column on PostgreSQL database.
    CF#20193
  • Bug: Blank description in the Service Context on grid portal
    CF#20419

Important Remaining Issues

Make use of logging consistent - elminate system out. We will address this if time permits
CF#14971
The NCI_Thesaurus association Has_Salt_Form and Has_Free_Acid_Or_Base needs reverse name. We will address this if time permits.
CF#15975
gov.nih.nci.evs.domain.Atom.getLUI does not return value. We will address this if time permits.
CF#15667
Serializer Exception on org.apach.lucene.search.regenex. We will address this if time permits.
CF#16678
Results not Deserializing Properly when using QueryModifiers on CQL Queries
CF#19406
Root concepts found by ListHierarchyMetaBySource when running against NCI MetaThesaurus with source set to NCI are different from root concepts in NCI Thesaurus.
CF#20354

CORE Product Dependencies

Refer to the CORE Product Dependency Matrix for the caCORE SDK and other software technologies on which this release of this product relies.

Release History

Release

Date

LexEVS 5.0

12 May 2009

LexEVS 4.2.1

30 January 2009

LexEVS 4.2

05 November 2008

EVS API 4.1.1

08 August 2008

EVS API 4.1

27 June 2008

EVS API 4.0

07 November 2007

caCORE 3.2

22 December 2006

caCORE 3.1

27 March 2006

caCORE 3.0.1.3

12 December 2006

caCORE 3.0.1.2

18 October 2005

caCORE 3.0.1.1

30 August 2005

caCORE 3.0.1

22 July 2005

caCORE 3.0

31 March 2005

caCORE 2.1

28 May 2004

caCORE 2.0.1

19 December 2003

caCORE 2.0

31 October 2003

caCORE 1.2

13 June 2003

caCORE 1.1

07 February 2003

caCORE 1.0

29 August 2002

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