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{{FAQ

release=caIntegrator 1.2

entrydate=August 31, 2010

topic=CaIntegrator Usage

Qtext=
*What is the format of caArray supplementary files that can be loaded into caIntegrator? *

Atext=
This knowledge base entry describes the format when creating supplemental files for use by caIntegrator. The supplemental files described here are to be added to an experiment in caArray prior to configuring a study in caIntegrator.

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  1. one column must contain the reporter/probe name.
  2. each additional columns are the reporter values such that there is one column per sample.
  3. one MULTIPLE SAMPLE FORMAT file for the whole experiment.
  4. CAVEAT: Currently the MULTIPLE SAMPLE FORMAT is slower to load than the SINGLE SAMPLE FORMAT for platforms other than Agilent Copy Number. This performance issue is expected to be improved in a future release.

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