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ItemWhoTalking Points
DGAB Updates

Kuffel, Gina (NIH/NCI) [C]

  • 33 TB of data are now available in ICDC (five-fold increase since January)
  • TCL01: A multi-omics analysis of canine cancer cell lines
    • Testing complete
    • Waiting on 6 study-level files
  • PRECINCT has used templates available from the ICDC Data Model Explorer (DME) for the first ever load of a study via submitter-generated loading files
    • Data includes program, study, and and complete case records.
    • No sample records or files derived from samples yet.
  • SAC approved new data submission request from Dawn Duval’s group: “Immune Pathways and TP53 missense mutations are associated with longer survival in canine osteosarcoma”. (26 tumor normal pairs)
  • Kick-off call for OSA02
BPSC Updates

Kuffel, Gina (NIH/NCI) [C] 

September Steering Committee Updates

Unknown User (parchmentr)

  • Minutes to be posted
  • Next meeting is October 19th
ICDC Site Updates

Kuffel, Gina (NIH/NCI) [C]

  • Next software release targets October 17th
    • Multi-file select for JBrowse
    • Elasticsearch
    • Data Model Explorer
      • ReadMe file and viewing modal 
      • TSV & JSON downloads of controlled vocabularies for properties with enumerated values
      • Node-specific tsv downloads
      • Faceted search augmented to include props featured on the UI
      • File transfer manifest to enable seamless file hand-offs
ICDC Next Phase Planning

Unknown User (hechtt)

Minutes (Not Verbatim)

TH - Will the PRECINCT program name remain the same, the reference is not indicative of the personnel or timeframes

CS - Maintaining an all-inclusive approach is the recommendation.

TH - Should we invite new PRECINCT members to the ICDC SC meeting? Previously we had Renee and Cheryl. Debbie is a constant and new awardee. People with database experience may be valuable to have.

CS - Jaime Modiano would be a good fit.

AL - Well-connected, asks great question, very introspective, good choice to invite Modiano.

CS - Other candidates would be David, Paul, Nikki, not sure of database experience.

TH - RFI response from Germany requesting circulating tumor cell data.


Previous ICDC Use Cases from Steering Committee

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AL- Giving presentation to the children's oncology group. Touched base with CIN and PRECINCT. The talk is osteo-focused.


Action items

  •  Unknown User (parchmentr) to add agenda item to ICDC Steering Committee to propose inviting selected PRECINCT members to the SC.