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caNanoLab logo


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titleKeeping Up With caNanoLab

For information about this caNanoLab release:

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titleAt a Glance Details
  • Version Number: (TBD)
  • and Release Date: 2.4 (date TBD), 2021
  • Primary audience: Investigators and researchers interested in information about the characterizations of nanomaterials used in biomedical research.
  • (TBD) The new release 3.1 has been moved to deploy on the Google Cloud App Engine Flex system. For now, use the 3.0 release for local installations.
  • (TBD) Installation Level (for 3.0): Intermediate - technical assistance may be required, download may require supporting infrastructure or software.
  • (TBD) System Requirements (for 3.0): This is a web-based application that can be accessed through an industry standard browser. Installation requires:
    • Memory 1GB or more (Linux, Solaris, or Windows)
    • Disk storage 36 GB (minimum)
    • Database Server: MySQL v 5.5.x
    • JBoss Wildfly, 8
    • Java 1.8

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Data curation is a key component for ensuring that data is appropriately annotated to facilitate data sharing in a semantically interoperable fashion. Data curation activities on caNanoLab are currently performed by the NCI Alliance for Nanotechnology in Cancer Data Coordinators and the NCI data curator. Data curators assist in extracting data from publications and nanotechnology experiments, annotating extracted data, and providing overall data quality control. If you are interested in submitting your data into caNanoLab, please contact Application Supportcontact Application Support.

Detailed data curation steps are explained in the Curation of Biomedical Data into ISA-TAB-Nano and caNanoLab Standard Operating Procedure.

Installation and Downloads

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caNanoLab

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3.1 Artifacts

  • A zip file is not available. Refer to the new code repository at https://github.com/isb-cgc/cananolab
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Note: Files for previous caNanoLab releases are available from the caNanoLab files archive. (TBD: Does this page still need this archive link?)

caNanoLab 2.4 Artifacts

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caNanoLab

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caNanoLab 2.3.10 Artifacts

caNanoLab 2.

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caNanoLab 2.

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caNanoLab 2.3.

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Forum and Support

  • caNanoLab User Forum
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     - Forum for recommending caNanoLab enhancements
  • Application SupportNanotechnology Working Group
  • Coordinator: (TBD: Who is coordinator now that Mervi has retired?)
    • Nanotechnology Working Group (TBD: Does this page still need this link? It points to the ICR wiki space, which is visible only to GP-CFW_ADMINS and GP-CFW_nanoTAB_DEV.): caNanoLab-Support@ISB-CGC.org

Presentations, Demos and Other Materials

The caNanoLab Data Submission Video and accompanying transcript is is available to assist people in submitting data in caNanoLab. (TBD: Does this page still need this 2.0 demo link?) 

Note: Materials for previous caNanoLab releases are available from the caNanoLab Presentations, Demos and Other Materials archive. (TBD: Does this page still need this materials link? If so, is the info on that materials page still valid?)

Documentation and Training

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Note: Documents for previous caNanoLab releases are available from the caNanoLab Presentations, Demos and Other Materials Archive and the Docs Archive Page - calab. (TBD: Does this page still need these archive links? Is the info on those pages still valid?)

Related Tools and Terminology

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