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Sections on this page include:

caArray Community Contribution

• caArray 054 - Step-By-Step Guide to Install and Use caArray Importer
• caArray 080 - A Step-by-Step Guide to Create a MAGE-TAB Template Specific to RPLA Project
• caArray055 Automated File Uploading Process
• caArray054 A step-by-step guide to install and use caArray Importer

caArray Installation and Upgrade

• caArray005 caArray 005 - Do I need to create an empty database prior to caArray or Other other LSD Tool Installationstool installations?
• caArray006 caArray 006 - Step by Step Guide to Install caArray 2.x Grid Service (Applicable to: caArray 2.2 & and Under)
• caArray011 Invalid Login or No Application found Error When Login UPT
• caArray015 Why am I not able to connect to my caArray 015 - How do I solve caArray 2.2.0+ application using localhost in URL? / Why can't I connect to a remote caArray 2.2.0+ application but can do so locally?problems with localhost and related issues?
• caArray 020 - How do I caArray020 How to configure Eclipse for caArray?
• caArray026 caArray 026 - Can I still change the port number after the caArray installation?
• caArray027 How to avoid caArray 027 - How do we avoid a JBOSS port conflict between applications such as caArray and caTissue Suite?
• caArray028 How to point caArray 028 - How do I point the caArray grid service to one of the non-production a different grid indexing service?
• caArray030 caArray 030 - Which ports are required for caArray to run?
• caArray031 How to caArray 031 - How do we install caArray on multiple servers?
• caArray044 caArray 044 - Should my caArray grid service be Analytical or Data Service?
• caArray045 Unable to Send User Registration Confirmation e-Mail.
• caArray053 How to remove the lock on my UPT superuser account?
• caArray057 caArray 057 - I deployed caArray in Eclipse but got exception when I tested the caArray. Why?
• caArray058 Is caArray 058 - Are there any guideline guidelines for Applying applying OS patching and Java updates on servers running caArray?
• caArray059 Where to download caArray 059 - Where do I download the caArray 2.3.1 GUI Installer?
• caArray062 caArray 062 - Where to get a complete list of caArray service URLs?
• caArray066 caArray 066 - The installation for caArray installation /Upgrade or upgrade failed. Where can I find the error log?
• caArray070 I was installing caArray with GUI installer on my PC by double-clicking on the GUI installer icon. I got Java version error. Why and How to fix it?
• caArray 070 - An error reports the wrong version of Java. What is the problem?
• caArray 077 - How do we increase caArray077 How to increase the time-out period when running CQL queries?
• caArray079 caArray 079 - Are there secure Grid services for caArray?
• caArray083 caArray 083 - Can we delete the legacy file during caArray upgrading ?

caArray Usage

• files during caArray upgrade?
• caArray 078 - What browsers does caArray support?
• caArray 091 - Internet connection not needed for the caArray GUI installer
• caArray 093 - How To Build caArray From Source Code - An Illustrated Tutorial

Introduction to caArray Usage

• caArray 049 - Introduction to caArray - caArray049 Introduction to caArray: a High-level Workflow
• caArray050 caArray 050 - Introduction to caArray : - Browse & and Search caArray Repository
• caArray078 What browsers does caArray support?

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• caArray 095 - Lists of Must-Have and Nice-to-Have Features to Support Next-Generation Sequencing Data

caArray User Account, Login and Admin Issues

• caArray 041 - caArray Account Management
• caArray029 How to Change caArray Admin caArray 029 - How do I change the caArray admin e-mail After the Installationaddress after installation?
• caArray035 How to Choose the Access Role Offered by caArray?
• caArray 035 - How do we choose the correct caArray access role for a user?
• caArray 065 - caArray065 Can we amend the ownership for a deleted user's experiment?
• caArray084 caArray 084 - Can users change their passwords in caArray?

• caArray 024 - Does the caArray user account with system administrator role have access to all experimental data?
• caArray 045 - User registration is unable to send the user an email to confirm registration. What do we do?

Working with Array Design Files

• caArray 039 - Array Design Files
• caArray 036 -
• caArray010 Where are the Array Design Files for caArray?
• caArray036 Working with Array Design File Files in caArray.
• caArrayDemo-004 Using caArray: Uploading Array Design File
• caArray 010 - Where are the Array Design Files for caArray?
• caArray 052 - caArray052 I would like to download an array design file, but I can't find it in caArray. Why?
• caArray074 caArray 074 - Can I give the rename a design file a different name while I upload the file in caArray?

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• and use it in a study?
• caArray 094 - Handling Array Designs
• caArray Demo-004 Using caArray: Uploading Array Design File (PowerPoint file)

Working with MAGE-TAB Files

• caArray 037 - MAGE-TAB Files
• caArray007 caArray 007 - What are the MAGE-TAB Files?
• caArray008 Annotation Tab vs MAGE-TAB Annotation Files in caArray
• caArray 008 - Should I use the Annotations tab or MAGE-TAB annotation files to annotate my experiment?
• caArray 009 - Highlights for caArray009 A Checklist: Building caArray's MAGE-TAB Annotation Files
• caArrayDemocaArray 060 - 001 How to load MAGE-TAB data into caArraycaArray060 How to How do I export experiment annotation and data files file into MAGE-TAB and GEO SOFT formats?
• caArray080 caArray 080 - A stepStep-by-step guide Step Guide to Create a MAGE-TAB template specific Template Specific to RPLA Project

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• caArray Demo-001 How to load MAGE-TAB data into caArray (CaArray_Demo_MAGE-TAB_Data_Upload_4_Revised_2.wmv)

Working with Data Files

• caArray 019 - caArray File Loading Process
• caArray002 How to Upload caArray 002 - How do I upload MicroArray Gene Expression Data into caArray?
• caArray013 Is There Any Size or Format Limitation on the Files Uploaded caArray 013 - Is there any size or format limitation on the files uploaded to caArray?
• caArray014 Which Files Can Be Uploaded caArray 014 - Which files can be uploaded into caArray?
• caArray016 Which File Can Be Parsed caArray 016 - Which file can be parsed into caArray? What is The Benefit of File Parsing?the benefit of file parsing?
• caArray 092 - Importing Data into caArray
• caArray 017 - What is the meaning of the caArray017 caArray Status of Importing : - Imported vs. versus Imported Not Parsed.?
• caArray018 caArray File Validation Process
• caArray 018 - What causes the error "Failed Validation"?
• caArray 051 - caArray051 Which columns in Illumina expression csv array design files are acceptable in caArray?
• caArray056 How to Import caArray 056 - How do I import an Affy .TXT file into caArray?
• caArray061 caArray 061 - What are is the differences among difference between the annotation options that are available when importing data?
• caArray067 Zip file uncompression failed. Why?
• caArray 067 - How do I resolve an error with unpacking the zip files?
• caArray 076 - caArray076 How can I upload and store QC data in caArray?
• caArray082 Datafile caArray 082 - The datafile is imported, but it is not downloadable. Why?

caArray038 *caArray Experiment Management

• caArray023 caArray 023 - Can multiple users upload microarray datafiles under the same experiment?
• caArray 025 - Does caArray have version control on uploaded files?
• caArray 087 - Why Do I Get an Error Message When Attempting to Validate an Illumina SNP Data File in caArray?
• caArray 089 - How Do I Upload Very Large Datasets?

Managing Experiments

• caArray 088 - Finding Information on an Experiment
• caArray 038 - caArray Experiment Management
• caArray 034 -
• caArray024 Does the account with caArray system administrator role have access to all experimental Data?
• caArray025 Does caArray Have Version Control on Uploaded Files?
• caArray034 Can I edit my experiment that has already been made public?
• caArray 012 - How do I add an organism to the Organism List in caArray?
• caArray 032 - caArray032 Can I recover a mistakenly deleted experiment from a caArray database backup?caArray043 Manage the public visibility of a caArray experiment
• caArray071 How to check whether my caArray data is published on caGrid?
• caArray072 caArray 072 - Can I delete an experiment with a the status as "In Progress"?

caArray046 *Management Experiment Ownership

• caArray022 Can caArray 090 - How do I change the ownership of the experiment in caArray?

• inactivity session timeout delay?

Administrative Tasks in caArray

• caArray 077 - How do we
• caArray012 The Organism List in caArray and How to Add One Manually
• caArrayDemo-002 How to Use caArray to Share Pre-Publishing Data?
• caArray077 How to increase time-out period when running CQL queries?

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• caArray 100 - caArray Audit

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• Trails
• caArray068 caArray 068 - What information can we find in an audit file?

Experiment Visibility and Data Sharing

• caArray 043 - Manage the Public Visibility of a caArray Experiment
• caArray 071 - How do I check if I am actually on caGrid sharing my microarray data?
• caArray 046 - Management Account Ownership
• caArray 022 - Can I change the ownership of the experiment in caArray?
• caArray 040 - caArray Global Settings
• caArray Demo-002 How to Use caArray to Share Pre-Published Data (PowerPoint file)

caArray Integration with Other Applications

caArray

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and UPT Integration

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• caArray 047 - How do I create a caArray account with UPT?
• caArray001 caArray 001 - Is UPT required for caArray or other application tools in LSD Bundle?
• caArray003 How to create caArray 003 - How do I create a caArray user with UPT?
• caArray021 Login caArray with LDAP Authentication
• caArray 011 - What do I do when I see the error "Invalid Login" or the "No Application found" error when I log in via UPT"?
• caArray 086 - UPT was installed successfully but I could not log in as the super user to set up caArray. Why?
• caArray 053 - How do I remove the lock on my UPT superuser account?
• caArray 021 - How to I configure caArray for LDAP authentication?
• caArray DemocaArrayDemo-005 Using UPT: Set up Application & and Create caArray Users (PowerPoint file)
• caArray 042 - caArray042 Is "user password" a required field for new user creation in UPT?
• caArray 075 - What is the difference between the "Group" in the UPT and the "Collaboration Group" in caArray?
• caArray075 UPT user group/caArray collaboration group clarification

caArray /geWorkbench Integration

• caArray 086 - UPT was installed successfully but I could not log in as the super user to set up caArray. Why?
• caArray Demo-005 Using UPT: Set up Application and Create caArray Users
• See also UPT and CSM FAQs

caArray and geWorkbench Integration

• caArray 004 - Can I access the caArray004 Can I access geWorkbench application from caArray?
• caArray033 caArray 033 - What is the version compatibility between geWorkbench and caArray?
• caArrayDemocaArray Demo-003 - Using geWorkbench to Remote Access caArray Data (PowerPoint file)

caArray

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and caIntegrator Integration

• caArray081 caArray 081 - Can caArray and caIntegrator2 share the same version of the UPT application?

caArray

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and caTissue Integration

Still can not find your questions yet? Please try one of following online helps:

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