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Although this tool is continually being improved to make it easier for scientist end users, it is not yet fully-featured. Notations of these limitations are made in each of the step-by-step guides linked below.

. In addition, you also can evaluate the evidence from which these associations originated and the codes and details that describe these associations. By using the caBIO Object Graph Browser, you may also view other annotations, such as sentence status flags, negation indicators, cell line indicators, and organism name.

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Step-by-step Guides

To use the Templated Search tool, follow the step-by-step instructions for using the Templated Search to find

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caBIO Portlet Templated Search Overview

caBIO is a resource that integrates biomedical data on genes, proteins, clinical protocols, disease ontologies, pharmacological agents, pathways, and other entities with annotations, controlled vocabularies, and metadata models originating from twenty-three data sources, including the Cancer Gene Index, the Pathway Interaction Database, and the University of California, Santa Cruz Distributed Annotation System.

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caBIO PORTLET TEMPLATED SEARCHES

Introduction

The Templated Search tool of the caBIO Portlet on the caGrid Portal quickly retrieves all genes that are associated with a particular disease, all of the genes associated with a particular compound, or all of the diseases and compounds that are associated with a particular gene. The Templated Search allows you to use gene, disease, and compound names or the NCI Thesaurus Concept Code associated with these names.

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