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When a user is given curation privileges and logs in as a curator, caNanoLab displays features unavailable to users without curation permissions. A curator can review data in caNanoLab and determine whether to make it publicly available. A curator can also manage batch data availability. |
If you are logged in as a curator, click the Curation option in the caNanoLab menu. The Manage Curation page displays two options. Click one of these links for more information about these two curation tasks.
A user assigned the Curator user role can log in and use the Curation menu to review protocols, samples, and publications for public access and generate data metrics for samples in batch mode. |
When you click the Curation menu, the Manage Curation page appears with the following options.
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If a user is not a curator and wants a protocol, sample, or publication that they own to be publicly-accessible, the user must submit it to a data curator for review. A data curator reviews the item, and when satisfied, changes it to Public access.
To review the data pending release to the public
- On the Manage Curation page, click the Review Data Pending Release to Public link.
The Data Pending Review page that opens displays the list of data to be reviewed. - Click the Edit link to open a data detail page where you can update a sample.
After reviewing the submitted data, you can assign the data to be Public. - Click To do so, click Add associated with the Access and the Access Information panel opens.
- to the * function. In the Access Information section of the expanded pagepanel, select the Public radio button and click Save.
- The item is now publicly-accessible from the caNanoLab public home page.
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To generate or remove data availability for multiple samples in a batch
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| The owner of a sample can always generate data availability metrics for the individual sample. |
- Click
On the Manage Curation page, click
Manage Batch Data Availability
on this link in the Manage Curation page.
,Select one of the following options:
The Manage Batch Data Availability page opens.
The following sample data availability batch options are available.Info title Processing time This batch process may take some time, but it runs in the background, so you can perform other options in caNanoLab.
Option Description Generate data availability for all samples Generates data availability metrics for all samples, including those where metrics were generated previously. Regenerate data availability of sample with existing availability Generates data availability metrics only for samples where metrics were generated previously.
Delete data availability for all samples - Click Submit.
The system informs you that the process will take a while. Removes all the current data availability metrics for all samples.
Click Submit, and a message displays indicating that the process may take some time.Upon finishing, caNanoLab opens a Results page with a message stating the status of the long running process
Info title Tip Runs in the background The Because the batch generation runs in the background, so you can leave this page and continue browsing other parts of the portal and come back later to check using caNanoLab.
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If you run a data metrics batch job from the Curation menu, you may be generating or removing metrics from many samples. This may take some time.
- You can continue to use caNanoLab while the batch processes.
- When the process completes, caNanoLab opens a Results page with a completion message.
- To check on the status of the process you initiated, click the Results menu.
The Long Running Processes table displays the status of the batch job.
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