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The CSSI DCC Portal is a public repository of experiment-related information describing cancer research investigations. You can use the portal to browse, search, and access data generated through CSSI funded projects and other user uploaded data sets. This data is in ISA-Tab format, which organizes investigation, study, and assay data according to the rules in the ISA-Tab specification
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Each data set contains three files--investigation, study, and assay--that conform to the ISA-Tab structure and naming conventions. Within this structure are fields that are standard for each type of file, though null values are allowed; that is, not every data set includes values for each field. The portal allows you to filter these fields in an interactive way so that you can visualize the data in a pie chart or list.
You can search investigations, studies, and assays using any keyword. You can download selected files, the entire data archive, or only the metadata associated with a study. You can also upload your own investigation data to the portal and make it open access. (For more information, refer to Uploading Investigation Data and Making it Open Access.)
The following sections provide page tree provides detailed instructions on how to browse, search, and download data.
Accessing Investigation Data
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Browsing Investigations
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Understanding the Pie Charts
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Understanding the Investigations List
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Adding and Removing Fields
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Exploring Investigation Details
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Investigation Details Page
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Study Details Page
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Assay Details Page
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Visualizing and Filtering Data
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Visualizing and Filtering Investigations
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Selecting Multiple Objects
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Visualizing and Filtering Study Data
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Visualizing and Filtering Assay Data
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Searching Investigation Data
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Performing a Basic Search
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Searching by Keyword or Phrase
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Searching ISA Tab Fields
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Searching by Related Terms
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Viewing Detailed Search Results
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Saving Search Parameters
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Managing Saved Search Parameters
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Downloading Investigation Data
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Downloading Full Data
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Downloading Selected Metadata
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Downloading Selected Data
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Downloading Large Files with Globus
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Managing Your Downloads
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Installing the DCC Download Manager
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Using the DCC Download Manager
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Using a Download Summary
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