Applicable Releases:</strong> Up to caArray 2.x

<strong>Date entered:</strong> Jan 15, 2010

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caArray Usage

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Introduction to caArray: a High-level Workflow

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Topic: caArray Usage

Release: Up to caArray 2.x

Date entered:

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Shown below is an interactive map outlining the high level workflow of caArray. Click on an area of interest will bring you to the collection of related knowledge base entries.

<imagemap>
Image:caarray-workflow.gif|center|700px
rect 393 53 508 138 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray041
rect 393 162 508 249 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray047
rect 684 182 857 271 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray040
rect 684 301 857 392 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray039
rect 205 520 350 614 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray038
rect 44 667 294 760 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray019
rect 307 667 497 760 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray037
rect 708 584 861 676 https://cabig-kc.nci.nih.gov/Molecular/KC/index.php/Caarray046
desc none
</imagemap>

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01/15/2010

Below is a diagram of the workflow in the caArray application. This diagram is rendered in text also, with a link to a key FAQ related to each action in the workflow.

Diagram of caArray Workflow
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You may Browse and download data as an anonymous user. caArray 041 - caArray Account Management

You may use Online Registration and Create an account. caArray 047 - Creating a caArray account with UPT

After creating an account, you may Log into caArray.

Once logged in, you may adjust Global Settings: Protocol, vocabulary and Collaborate Group. caArray 040 - caArray Global Settings

You may also Manage array design: upload, download, and edit. caArray 039 - Array Design Files

If you are a system administrator, you may Manage Experiment Ownership. caArray 046 - Management Account Ownership

As a user, you may Manage Experiment. caArray 038 - caArray Experiment Management

You may Edit, Delete, Download, or Grant Permissions to My Experiment Workspace. caArray 019 - caArray File Loading Process

You may create an experiment. (Upload datafile, annotation and supplement) caArray 037 - MAGE-TAB Files

If you have a comment, please leave your comment in the caArray End User Forum.