Page History
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- The NCI collaborator provides a list of publications suggested for curation.
- Publications are evaluated whether they are curable, i.e. comprise information relavant for curation in caNanoLab.
- Data extraction from the publication.
- Submission of extracted data into caNanoLab and into ISA-TAB-Nano forms.
- Information submitted into caNanoLab must be machine-readable, searchable and comply with the established standards.
- Sending to authors of a publication, a request for additional data and submission of provided additional data into caNanoLab and ISA-TAB-Nano forms.
Initial Steps
- Create a caNanoLabData folder on a system or server that gets backup regularly. The caNanoLabData folder contains folders, named after institution or collaboration, e.g. USC_UV which contain additional subfolders. These subfolders, e.g., are named after first author of a publication, publication abbreviation, and publication year, e.g. , JCrecente-CampoJCR2019 contain an individual publication, i.e. PDF file and any supplemental data associated with a publication, extracted data, and supplemental data provided by an author. The caNanoLabData folder contains all auxiliary files, e.g. a list of cell lines, a list of all curated publications, a list of chemical compounds, a list of new terms, and recently added list of Bioportal terms.
- Create a subfolder in caNanoLab folder to store the publication and extracted data. A subfolder name comprises first author name, journal name, and year of publication. Additional subfolder within this subfolder is created to store ISA-TAB-Nano forms.
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