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• caArray 005 - Do I need to create an empty database prior to caArray or other LSD tool installations?
• caArray 006 - Step by Step Guide to Install caArray 2.x Grid Service (caArray 2.2 and Under)
• caArray 011 - What do I do when I see the error "Invalid Login" or the "No Application found" error when I log in via UPT"?
• caArray 015 - How do I solve caArray 2.2.0+ problems with localhost and related issues?
• caArray 020 - How do I configure Eclipse for caArray? How to configure Eclipse for caArray?
• caArray 026 - Can I change the port number after caArray installation? Can I still change the port number after the caArray installation?
• caArray 027 - How do we avoid a JBOSS port conflict between applications such as caArray and caTissue Suite? How to avoid JBOSS port conflict between applications such as caArray and caTissue Suite?
• caArray 028 - How do I point the caArray grid service to a different grid indexing service? How to point caArray grid service to one of the non-production grid indexing service?
• caArray 030 - Which ports are required for caArray to run? Which ports are required for caArray to run?
• caArray 031 - How do we install caArray on multiple servers? How to install caArray on multiple servers?
• caArray 044 - Should my caArray grid service be Analytical or Data Service? Should my caArray grid service be Analytical or Data Service?
• caArray 045 - User registration is unable to send the user an email to confirm registration. What do we do? Unable to Send User Registration Confirmation e-Mail.
• caArray 053 - How do I remove the lock on my UPT superuser account? How to remove the lock on my UPT superuser account?
• caArray 057 - I deployed caArray in Eclipse but got exception when I tested the caArray. Why? I deployed caArray in Eclipse but got exception when I tested the caArray. Why?
• caArray 058 - Are there any guidelines for applying OS patching and Java updates on servers running caArray? Is there any guideline for Applying OS patching and Java updates on servers running caArray?
• caArray 059 - Where do I download the caArray 2.3.1 GUI Installer? Where to download caArray 2.3.1 GUI Installer?
• caArray 062 - Where to get a complete list of caArray service URLs? Where to get a complete list of caArray service URLs?
• caArray 066 - The installation for caArray installation or upgrade failed. Where can I find the error log? The installation for caArray installation or Upgrade failed. Where can I find the error log?
• caArray 070 - An error reports the wrong version of Java. What is the problem? I was installing caArray with GUI installer on my PC by double-clicking on the GUI installer icon. I got Java version error. Why and How to fix it?
• caArray 077 - How do we increase time-out period when running CQL queries? How to increase the time-out period when running CQL queries?
• caArray 079 - Are there secure Grid services for caArray? Are there secure Grid services for caArray?
• caArray 083 - Can we delete the legacy files during caArray upgrade? Can we delete the legacy file during caArray upgrading ?

caArray Usage

• caArray 049 - Introduction to caArray - a High-level Workflow Introduction to caArray: a High-level Workflow
• caArray 050 - Introduction to caArray - Browse and Search caArray Repository Introduction to caArray: Browse and Search caArray Repository
• caArray 078 - What browsers does caArray support? What browsers does caArray support?
• caArray 041 - caArray Account Management caArray Account Management
• caArray 029 - How do I change the caArray admin e-mail address after installation? How to Change caArray Admin e-mail After the Installation?
• caArray 035 - How do we choose the correct caArray access role for a user? How to Choose the Access Role Offered by caArray?
• caArray 065 - Can we amend the ownership for a deleted user's experiment? Can we amend the ownership for a deleted user's experiment?
• caArray 084 - Can users change their passwords in caArray? Can users change their passwords in caArray?
• caArray 039 - Array Design Files caArray Array Design File
• caArray 010 - Where are the Array Design Files for caArray? Where are the Array Design Files for caArray?
• caArray 036 - Working with Array Design Files in caArray Working with Array Design File in caArray.
• caArrayDemo-004 Using caArray: Uploading Array Design File
• caArray 052 - I would like to download an array design file, but I can't find it in caArray. Why? I would like to download an array design file, but I can't find it in caArray. Why?
• caArray 074 - Can I rename a design file and use it in a study? Can I give the design file a different name while I upload the file in caArray?
• caArray 037 - MAGE-TAB Files MAGE-TAB Files
• caArray 007 - What are the MAGE-TAB Files? What are the MAGE-TAB Files?
• caArray 008 - How do I use the Annotation Tab versus MAGE-TAB Annotation Files in caArray? Annotation Tab vs MAGE-TAB Annotation Files in caArray
• caArray 009 - Checklist for Building caArray's MAGE-TAB Annotation Files A Checklist: Building caArray's MAGE-TAB Annotation Files
• caArrayDemo-001 How to load MAGE-TAB data into caArray
• caArray 060 - How do I export experiment annotation and data file into MAGE-TAB and GEO SOFT formats? How to export experiment annotation and data files into MAGE-TAB and GEO SOFT formats?
• caArray 080 - A Step-by-Step Guide to Create a MAGE-TAB Template Specific to RPLA Project A step-by-step guide to Create MAGE-TAB template specific to RPLA Project
• caArray 019 - caArray File Loading Process caArray File Loading Process
• caArray 002 - How do I upload MicroArray Gene Expression Data into caArray? How to Upload MicroArray Gene Expression Data into caArray?
• caArray 013 - Is there any size or format limitation on the files uploaded to caArray? Is There Any Size or Format Limitation on the Files Uploaded to caArray?
• caArray 014 - Which files can be uploaded into caArray? Which Files Can Be Uploaded into caArray?
• caArray 016 - Which file can be parsed into caArray? What is the benefit of file parsing? Which File Can Be Parsed into caArray? What is The Benefit of File Parsing?
• caArray 017 - What is the meaning of the caArray Status of Importing - Imported versus Imported Not Parsed? caArray Status of Importing: Imported vs. Imported Not Parsed.
• caArray 018 - What causes the error "Failed Validation"? caArray File Validation Process
• caArray 051 - Which columns in Illumina expression csv array design files are acceptable in caArray? Which columns in Illumina expression csv array design files are acceptable in caArray?
• caArray 056 - How do I import an Affy .TXT file into caArray? How to Import Affy .TXT file into caArray
• caArray 061 - What is the difference between the annotation options that are available when importing data? What are the differences among the annotation options that are available when importing data?
• caArray 067 - How do I resolve an error with unpacking the zip files? Zip file uncompression failed. Why?
• caArray 076 - How can I upload and store QC data in caArray? How can I upload and store QC data in caArray?
• caArray 082 - The datafile is imported, but it is not downloadable. Why? Datafile is imported, but it is not downloadable. Why?
• caArray 086 - UPT was installed successfully but I could not log in as the super user to set up caArray. Why? What are the columns that are required for an Illumina csv data file?
• caArray 038 - caArray Experiment Management caArray Experiment Management
• caArray 023 - Can multiple users upload microarray datafiles under the same experiment? Can multiple users upload microarray datafiles under the same experiment?
• caArray 024 - Does the caArray user account with system administrator role have access to all experimental data? Does the account with caArray system administrator role have access to all experimental Data?
• caArray 025 - Does caArray have version control on uploaded files? Does caArray Have Version Control on Uploaded Files?
• caArray 034 - Can I edit my experiment that has already been made public? Can I edit my experiment that has already been made public?
• caArray 032 - Can I recover a mistakenly deleted experiment from a caArray database backup? Can I recover a mistakenly deleted experiment from a caArray database backup?
• caArray 043 - Manage the Public Visibility of a caArray Experiment Manage the public visibility of a caArray experiment
• caArray 071 - How do I check if I am actually on caGrid sharing my microarray data? How to check whether my caArray data is published on caGrid?
• caArray 072 - Can I delete an experiment with the status as "In Progress "? Can I delete an experiment with a status "In Progress"?
• caArray 046 - Management Account Ownership Management Experiment Ownership*
• caArray 022 - Can I change the ownership of the experiment in caArray? Can I change the ownership of the experiment in caArray?
• caArray 040 - caArray Global Settings caArray Global Settings
• caArray 012 - How do I add an organism to the Organism List in caArray? The Organism List in caArray and How to Add One Manually
• caArrayDemo-002 How to Use caArray to Share Pre-Publishing Data?
• caArray 077 - How do we increase time-out period when running CQL queries? How to increase time-out period when running CQL queries?
• caArray 100 - caArray Audit Trails caArray Audit Trail
• caArray 068 - What can we find in an audit file? What information can we find in an audit file?

caArray Integration with Other Applications

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• caArray 047 - How do I create a caArray account with UPT? Create caArray account with UPT
• caArray 001 - Is UPT required for caArray or other application tools in LSD Bundle? Is UPT required for caArray?
• caArray 003 - How do I create a caArray user with UPT? How to create caArray user with UPT?
• caArray 021 - How to I configure caArray for LDAP authentication? Login caArray with LDAP Authentication
• caArrayDemo-005 Using UPT: Set up Application & Create caArray Users
• caArray 042 - Is "user password" a required field for new user creation in UPT? Is "user password" a required field for new user creation in UPT?
• caArray 075 - What is the difference between the "Group" in the UPT and the "Collaboration Group" in caArray? UPT user group/caArray collaboration group clarification
• caArray 086 - UPT was installed successfully but I could not log in as the super user to set up caArray. Why? UPT was installed successfully but I could not log in as the super user. Why?

caArray and geWorkbench Integration

• caArray 004 - Can I access the geWorkbench application from caArray? Can I access geWorkbench application from caArray?
• caArray 033 - What is the version compatibility between geWorkbench and caArray? What is the version compatibility between geWorkbench and caArray?
• caArrayDemo-003 - Using geWorkbench to Remote Access caArray Data

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• caArray 081 - Can caArray and caIntegrator2 share the same version of the UPT application? Can caArray and caIntegrator2 share the same version of UPT application?

caArray and caTissue Integration

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For more information

Still can not find the answer to your questions yet? Please try one of following online resources:

caGrid Trouble Shooting

UPT and CSM FAQs