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1. Select or enter data for the copy number query fields shown in the following figure and described below.
   
   • Copy Number values: Select one or more of the Calls values. Values are -1 (loss), 0 (normal) or 1, (gain). If four levels were used for calling, a value of 2 represents an amplification.
   • Genome Interval > Gene Name – See #Gene Names Search.

• Genome Interval > Chromosome Number – In the text box that opens, enter the chromosome number you want the query to search against.
  • Genome Interval > Chromosome Coordinates – In the From and To text boxes that open, enter the range on the chromosome you want to search. This defines the chromosomal boundaries of the region with the suspected copy number variations.
    For more information about CGHCalls, see CGHcalls.

1. Continue with step 6 in Searching a caIntegrator Study.

   Include Page
   caIntegrator:Choosing Genes caIntegrator:Choosing Genes

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