NIH | National Cancer Institute | NCI Wiki  

WIKI MAINTENANCE NOTICE

Please be advised that NCI Wiki will be will be undergoing maintenance on Monday, June 24th between 1000 ET and 1100 ET.
Wiki will remain available, but users may experience screen refreshes or HTTP 502 errors during the maintenance period. If you encounter these errors, wait 1-2 minutes, then refresh your page.

If you have any questions or concerns, please contact the CBIIT Atlassian Management Team.

Versions Compared

Old Version 1

changes.mady.by.user Kuffel, Gina (NIH/NCI) [C]

Saved on

compared with

New Version 2

changes.mady.by.user Kuffel, Gina (NIH/NCI) [C]

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

ItemWhoTalking Points
DGAB Updates

Kuffel, Gina (NIH/NCI) [C]

  • 33 TB of data are now available in ICDC (five-fold increase since January)
  • TCL01: A multi-omics analysis of canine cancer cell lines
    • Testing complete
    • Waiting on 6 study-level files
  • PRECINCT has used templates available from the ICDC Data Model Explorer (DME) for the first ever load of a study via submitter-generated loading files
    • Data includes program, study, and and complete case records.
    • No sample records or files derived from samples yet.
  • SAC approved new data submission request from Dawn Duval’s group: “Immune Pathways and TP53 missense mutations are associated with longer survival in canine osteosarcoma”. (26 tumor normal pairs)
  • Kick-off call for OSA02
BPSC Updates

Kuffel, Gina (NIH/NCI) [C] 

September Steering Committee Updates

Unknown User (parchmentr)

  • Minutes to be posted
  • Next meeting is October 19th
ICDC Site Updates

Kuffel, Gina (NIH/NCI) [C]

  • Next software release targets October 17th
    • Multi-file select for JBrowse
    • Elasticsearch
    • Data Model Explorer
      • ReadMe file and viewing modal 
      • TSV & JSON downloads of controlled vocabularies for properties with enumerated values
      • Node-specific tsv downloads
      • Faceted search augmented to include props featured on the UI
      • File transfer manifest to enable seamless file hand-offs
ICDC Next Phase Planning

Unknown User (hechtt)

...