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Coding Scheme
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Entities
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Relations
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Coding Scheme
UMLS SemNet Mapping | |||||
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | comments |
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Coding Scheme | |||||
| codingScheme.representsVersion | ||||
| codingScheme.codingSchemeName | hard coded in java file as "UMLS_SemNet" | |||
| codingScheme.formalName | hard coded in java file as "UMLS Semantic Network" | |||
| codingScheme.defaultLanguage | hard coded in java file as "en" | |||
| codingScheme.approxNumConcepts | hard coded in java file as | |||
| codingScheme.entityDescription | hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus." | |||
license.txt | codingScheme.copyright | Read from license.txt file or hard coded reference in java file | |||
| codingScheme.codingSchemeURI | hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" | |||
| codingScheme.relations.containerName | hard coded in java file as "relations" | |||
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| codingScheme.localNameList | ||||
| codingScheme.localNameList. | hard coded in java file as "UMLS_SemNet" | |||
| codingScheme.localNameList | ||||
| codingScheme.localNameList. | ||||
| codingScheme.source | ||||
| codingScheme.source.content | ||||
| codingScheme.localNameList | ||||
| codingScheme.localNameList. | ||||
| codingScheme.localNameList | ||||
| codingScheme.localNameList. | ||||
| codingScheme.localNameList | ||||
| codingScheme.localNameList. | ||||
| codingScheme.localNameList | ||||
| codingScheme.localNameList. | ||||
| mappings.supportedFormat | ||||
| mappings.supportedFormat.localId | hard coded in java file as "text/plain" | |||
| mappings.supportedFormat.uri | hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain" | |||
| mappings.supportedAssociation | ||||
SRDEF | RL | mappings.supportedAssociation.localId | |||
| mappings.supportedContext | ||||
| mappings.supportedSource | ||||
| mappings.supportedSource.localId | hard coded in java file as "NLM" | |||
| mappings.supportedSource.uri | hard coded in java file as "urn:lsid:nlm.nih.gov" | |||
| mappings.supportedHierarchy | ||||
| mappings.supportedHierarchy.localId | hard coded in java file as "is_a" | |||
| mappings.supportedHierarchy.isForwardNavigable | hard coded as "true" | |||
| mappings.supportedHierarchy.rootCode | hard coded as "@" | |||
| mappings.supportedHierarchy.associationList | hard coded in java file as "hasSubtype" | |||
| mappings.supportedAssociationQualifier | ||||
SRFLD | COL | mappings.supportedProperty | |||
| mappings.supportedProperty.localId | If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such. | |||
| mappings.supportedProperty.uri | hard coded in java file as "" | |||
| mappings.supportedLanguage | ||||
| mappings.supportedLanguage.localId | hard coded in java file as "en" | |||
| mappings.supportedLanguage.uri | hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en" | |||
| mappings.supportedCodingScheme | ||||
| mappings.supportedCodingScheme.localId | hard coded in java file as "UMLS_SemNet" | |||
| mappings.supportedCodingScheme.uri | hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" | |||
| mappings.supportedRepresentationalForm | ||||
| mappings.supportedConceptStatus | ||||
| mappings.supportedPropertyLink | ||||
| mappings.supportedPropertyQualifier | ||||
| mappings.supportedDataType |
Entitiess
UMLS SemNet Mapping | |||||
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | comments |
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Concepts | |||||
SRDEF | UI | Entity.entityCode | |||
SRDEF | STY/RL | Entity.enitityDescription(inheritance path Entity->versionableAndDescribable) | |||
| Entity.Property | ||||
SRDEF | NH | Entity.Property.text.content | |||
| Entity.Property.value.text.dataType | hard coded in java file as "text/plain" | |||
| Entity.Property.propertyName | hard coded in java file as "NH" | |||
| Entity.Property.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |||
| Entity.presentation | ||||
| Entity.presentation.propertyName (inherited from Property) | Hard coded in java file as "STY/RL" or "ABR" | |||
| Entity.presentation.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |||
SRDEF | STY/RL, ABR | concept.presentation.text.content | |||
| Entity.presentation.value.text.dataType | hard coded in java file as "text/plain" | |||
| Entity.presentation.isPreferred | hard coded in java file as true. | |||
| Entity.definition.propertyName (inherited from Property) | Hard coded in java file as "DEF" | |||
| concept.definition.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |||
SRDEF | DEF | Entity.definition.text.content | |||
| Entity.definition.value.text.dataType | hard coded in java file as "text/plain" | |||
| Entity.definition.isPreferred | hard coded in java file as true. | |||
| Entity.comment | ||||
SRDEF | EX | Entity.comment.propertyName (inherited from Property) | Hard coded in java file as "EX" | ||
| Entity.comment.text.content | ||||
| Entity.comment.value.text.dataType | hard coded in java file as "text/plain" | |||
| Entity.comment.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. | |||
| Entity.instruction | ||||
| Entity.instruction.propertyName (inherited from Property) | Hard coded in java file as "UN" | |||
SRDEF | UN | Entity.instruction.text.content | |||
| Entity.instruction.value.text.dataType | hard coded in java file as "text/plain" | |||
| Entity.instruction.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
Relations
...
UMLS SemNet Mapping
...
RRF File Name
...
RRF Column Name
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RRF Definition
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NCI Meta only
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LexGrid Model Element
...
comments
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Relations
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SRSTR
...
RL
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AssociationPredicate.associationName
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In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed
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AssociationEnity.isTransitive
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hard coded to true if the value of RL is "isa"
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SRSTR
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RL
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AssociationEntity.forwardName
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Reversed when value of RL is "isa"
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SRSTR
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STY/RL
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AssociationSource.sourceEntityCode
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Reversed when value of RL is "isa"
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SRSTR
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STY/RL
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AssociationTarget.targetEntityCode
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SRDEF
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RIN
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AssociationEntity.reverseName
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SRDEF
...
DEF
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AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)
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When SRDEF value RT is "RL"
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SRSTRE1
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UI/STY(first argument)
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AssociationSource.sourceEntityCode
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Reversed when value of RL is "isa"
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SRSTRE1
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UI/STY(2nd argument)
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AssociationTarget.targetEntityCode
...
