Coding Scheme
UMLS SemNet Mapping |
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RRF File Name |
RRF Column Name |
RRF Definition |
NCI Meta only |
LexGrid Model Element |
comments |
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Coding Scheme |
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codingScheme.representsVersion |
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codingScheme.codingSchemeName |
hard coded in java file as "UMLS_SemNet" |
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codingScheme.formalName |
hard coded in java file as "UMLS Semantic Network" |
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codingScheme.defaultLanguage |
hard coded in java file as "en" |
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codingScheme.approxNumConcepts |
hard coded in java file as |
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codingScheme.entityDescription |
hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus." |
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license.txt |
codingScheme.copyright |
Read from license.txt file or hard coded reference in java file |
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codingScheme.codingSchemeURI |
hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
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codingScheme.relations.containerName |
hard coded in java file as "relations" |
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codingScheme.localNameList |
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codingScheme.localNameList. |
hard coded in java file as "UMLS_SemNet" |
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codingScheme.localNameList |
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codingScheme.localNameList. |
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codingScheme.source |
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codingScheme.source.content |
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codingScheme.localNameList |
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codingScheme.localNameList. |
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codingScheme.localNameList |
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codingScheme.localNameList. |
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codingScheme.localNameList |
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codingScheme.localNameList. |
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codingScheme.localNameList |
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codingScheme.localNameList. |
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mappings.supportedFormat |
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mappings.supportedFormat.localId |
hard coded in java file as "text/plain" |
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mappings.supportedFormat.uri |
hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain" |
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mappings.supportedAssociation |
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SRDEF |
RL |
mappings.supportedAssociation.localId |
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mappings.supportedContext |
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mappings.supportedSource |
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mappings.supportedSource.localId |
hard coded in java file as "NLM" |
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mappings.supportedSource.uri |
hard coded in java file as "urn:lsid:nlm.nih.gov" |
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mappings.supportedHierarchy |
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mappings.supportedHierarchy.localId |
hard coded in java file as "is_a" |
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mappings.supportedHierarchy.isForwardNavigable |
hard coded as "true" |
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mappings.supportedHierarchy.rootCode |
hard coded as "@" |
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mappings.supportedHierarchy.associationList |
hard coded in java file as "hasSubtype" |
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mappings.supportedAssociationQualifier |
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SRFLD |
COL |
mappings.supportedProperty |
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mappings.supportedProperty.localId |
If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such. |
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mappings.supportedProperty.uri |
hard coded in java file as "" |
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mappings.supportedLanguage |
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mappings.supportedLanguage.localId |
hard coded in java file as "en" |
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mappings.supportedLanguage.uri |
hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en" |
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mappings.supportedCodingScheme |
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mappings.supportedCodingScheme.localId |
hard coded in java file as "UMLS_SemNet" |
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mappings.supportedCodingScheme.uri |
hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
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mappings.supportedRepresentationalForm |
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mappings.supportedConceptStatus |
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mappings.supportedPropertyLink |
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mappings.supportedPropertyQualifier |
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mappings.supportedDataType |
Entitiess
UMLS SemNet Mapping |
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RRF File Name |
RRF Column Name |
RRF Definition |
NCI Meta only |
LexGrid Model Element |
comments |
|---|---|---|---|---|---|
Concepts |
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SRDEF |
UI |
Entity.entityCode |
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SRDEF |
STY/RL |
Entity.enitityDescription(inheritance path Entity->versionableAndDescribable) |
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Entity.Property |
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SRDEF |
NH |
Entity.Property.text.content |
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Entity.Property.value.text.dataType |
hard coded in java file as "text/plain" |
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Entity.Property.propertyName |
hard coded in java file as "NH" |
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Entity.Property.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
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Entity.presentation |
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Entity.presentation.propertyName (inherited from Property) |
Hard coded in java file as "STY/RL" or "ABR" |
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Entity.presentation.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
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SRDEF |
STY/RL, ABR |
concept.presentation.text.content |
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Entity.presentation.value.text.dataType |
hard coded in java file as "text/plain" |
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Entity.presentation.isPreferred |
hard coded in java file as true. |
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Entity.definition.propertyName (inherited from Property) |
Hard coded in java file as "DEF" |
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concept.definition.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
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SRDEF |
DEF |
Entity.definition.text.content |
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Entity.definition.value.text.dataType |
hard coded in java file as "text/plain" |
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Entity.definition.isPreferred |
hard coded in java file as true. |
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Entity.comment |
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SRDEF |
EX |
Entity.comment.propertyName (inherited from Property) |
Hard coded in java file as "EX" |
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Entity.comment.text.content |
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Entity.comment.value.text.dataType |
hard coded in java file as "text/plain" |
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Entity.comment.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
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Entity.instruction |
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Entity.instruction.propertyName (inherited from Property) |
Hard coded in java file as "UN" |
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SRDEF |
UN |
Entity.instruction.text.content |
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Entity.instruction.value.text.dataType |
hard coded in java file as "text/plain" |
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Entity.instruction.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
Relations
UMLS SemNet Mapping |
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RRF File Name |
RRF Column Name |
RRF Definition |
NCI Meta only |
LexGrid Model Element |
comments |
|---|---|---|---|---|---|
Relations |
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SRSTR |
RL |
AssociationPredicate.associationName |
In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed |
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AssociationEnity.isTransitive |
hard coded to true if the value of RL is "isa" |
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SRSTR |
RL |
AssociationEntity.forwardName |
Reversed when value of RL is "isa" |
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SRSTR |
STY/RL |
AssociationSource.sourceEntityCode |
Reversed when value of RL is "isa" |
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SRSTR |
STY/RL |
AssociationTarget.targetEntityCode |
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SRDEF |
RIN |
AssociationEntity.reverseName |
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SRDEF |
DEF |
AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable) |
When SRDEF value RT is "RL" |
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SRSTRE1 |
UI/STY(first argument) |
AssociationSource.sourceEntityCode |
Reversed when value of RL is "isa" |
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SRSTRE1 |
UI/STY(2nd argument) |
AssociationTarget.targetEntityCode |
Reversed when value of RL is "isa" |
