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Question: Which columns are required for an Illumina csv datafile and caArray?
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Topic: caArray Usage
Release: caArray 2.0 and above
Date entered: 05/28/2011
Details about the Question
What are the columns that are required for an Illumina csv data filedatafile? There are many columns in an Illumina csv data file. Which ones are required by caArray?
Answer
Required Fields |
|---|
Probe_ID/ID_REF |
AVG_Signal (prefixed with "<hygridixation_name>" or suffixed with "-<hybridization_name>") |
Detection/DetectionPVal/Detection Pval (prefixed with "<hygridixation_name>" or suffixed with "-<hybridization_name>") |
If the array design for Illumina data is other than BGX/TXT format
Required Fields |
|---|
TargetID |
ProbeId |
AVG_Signal (prefixed with "<hygridixation_name>" or suffixed with "-<hybridization_name>") |
Detection/DetectionPVal/Detection Pval (prefixed with "<hygridixation_name>" or suffixed with "-<hybridization_name>") |
Optional fields
Fields |
|---|
MIN_Signal |
MAX_Signal |
NARRAYS |
ARRAY_STDEV |
BEAD_STDEV |
Avg_NBEADS |
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