NIH | National Cancer Institute | NCI Wiki  

WIKI MAINTENANCE NOTICE

Please be advised that NCI Wiki will be undergoing maintenance on Thursday, May 23rd between 1200 ET and 1300 ET.
Wiki will remain available, but users may experience screen refreshes or HTTP 502 errors during the maintenance period. If you encounter these errors, wait 1-2 minutes, then refresh your page.

If you have any questions or concerns, please contact the CBIIT Atlassian Management Team.

Versions Compared

Old Version 69

changes.mady.by.user Unknown User (hadfielj)

Saved on

compared with

New Version 70

changes.mady.by.user Unknown User (hadfielj)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

  • Add new attributes (annotations) and upload relevant data to the existing study.
  • Disable or re-enable a study
  • Delete the study
  • Modify existing annotation definitions
  • Reload a subset of a study data and re-deploy the study and perform new analyses
  • Re-deploy the entire study with new set of data and mappings.

Editing or Updating a Study

To update, edit or delete a study, follow these steps:

  1. On the left sidebar, click Manage Studies. The Manage Studies page appears, shown in the following figure.
    Manage Studies page
    All of the "in process" or "completed" studies display on this page with associated metadata. Note that whoever edited or updated the study last is shown in the Last Modified Column, indicated as the Study Manager.
  2. Click the Edit link corresponding to your study of choice to open the Edit Studies page, shown in the following figure.
    Edit Studies page where you can edit any details for an existing study
    On this page you can edit any details such as adding or deleting files, survival values, and so forth. For information about working with the Edit Study feature, see #Creating/Editing a Study.
  3. Click the Delete link to delete the corresponding study.

Disabling or Re-enabling a Study

To disable or re-enable a study, follow these steps:

  1. On the left sidebar, click Manage Studies. The Manage Studies page appears, displaying the studies for which you have permissions.
  2. In the Action column, click the Disable link corresponding to your study of choice.
    The Manage Studies page refreshes, now showing that the study must be enabled to be accessible.
  • Disabling a study is recorded in the study log.
  • A disabled study is not searchable nor available to any user.
  • A disabled study cannot be edited nor copied.
  • The study manager can re-enable a disabled study. To do so, click the Enable link in the Action column on the Manage Studies page. When a study is re-enabled, there is no data change to the study from the original.
  • A disabled study being re-enabled must not duplicate the name of a currently enabled study.

Managing Platforms

caIntegrator supports a limited number of array platforms, all of which originate from Agilent or Affymetrix. While they do not represent all of the platforms supported by caArray, caIntegrator must have array definitions loaded for the platforms it supports, and be able to properly load the data from caArray and parse it. For more information, see B - Platforms Supported by caIntegrator.

...