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h1. |
Question:
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Which
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columns
...
in
...
Illumina
...
expression
...
csv
...
array
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design
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files
...
are
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acceptable
...
in
...
caArray?
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Topic
...
:
...
caArray
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Usage
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Release
...
:
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caArray
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2.0
...
and
...
above
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Date
...
entered
...
:
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02/16/2010
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Detail
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about
...
Question
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There
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are
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28
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columns
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in
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Illumina
...
design
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file
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HumanRef-8_V2_0_R4_11223162_A.csv.
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Some
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of
...
them
...
were
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rejected
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by
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caArray
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(Build
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CAARRAY_R2_2_1_GA).
...
I
...
can
...
edit
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the
...
table
...
but
...
I
...
need
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to
...
know
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which
...
columns
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the
...
current
...
system
...
accepts?
Answer
Not all of the columns in the Illumina expression csv array design file are recognized by caArray. Following are the columns accepted by caArray and listed in the order required by caArray.
- Search_key
- Target
- ProbeId
- Gid
- Transcript
- Accession
- Symbol
- Type
- Start
- Probe_Sequence
- Definition
- Ontology
- Synonym
Please note, the column, ProbeId, should not be confused with another different column in Illumina's: Probe_Id. The table below identifies the difference between the two columns:
Column Name | Format | Sample Date |
---|---|---|
ProbeId | Integer | 2360044 |
Probe_Id | Character | ILMN_xxxxx |
Have a comment?
Please leave your comment in the caArray End User Forum.
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h2. Answer
Not all of the columns in the Illumina expression csv array design file are recognized by caArray. Following are the columns accepted by caArray and listed in the order required by caArray.
# Search_key
# Target
# ProbeId
# Gid
# Transcript
# Accession
# Symbol
# Type
# Start
# Probe_Sequence
# Definition
# Ontology
# Synonym
Please note, the column, ProbeId, should not be confused with another different column in Illumina's: Probe_Id. The table below identifies the difference between the two columns:
|| Column Name || Format || Sample Date ||
| ProbeId | Integer | 2360044 |
| Probe_Id | Character | ILMN_xxxxx |
h2. Have a comment?
Please leave your comment in the [caArray End User Forum|https://cabig-kc.nci.nih.gov/Molecular/forums/viewtopic.php?f=6&t=577].
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