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Coding Scheme

RRF File Name

RRF Column Name

RRF Definition

NCI Meta only

LexGrid Model Element

Comments

 

 

 

NA

codingScheme.representsVersion

No comments

 

 

 

NA

codingScheme.codingSchemeName

hard coded in java file as "UMLS_SemNet"

 

 

 

NA

codingScheme.formalName

hard coded in java file as "UMLS Semantic Network"

 

 

 

NA

codingScheme.defaultLanguage

hard coded in java file as "en"

 

 

 

NA

codingScheme.approxNumConcepts

hard coded in java file as

 

 

 

NA

codingScheme.entityDescription

hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus."

license.txt

 

 

NA

codingScheme.copyright

Read from license.txt file or hard coded reference in java file

 

 

 

NA

codingScheme.codingSchemeURI

hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"

 

 

 

NA

codingScheme.relations.containerName

hard coded in java file as "relations"

 

 

 


 

 

 

 

 

NA

codingScheme.localNameList

No comments

 

 

 

NA

codingScheme.localNameList.

hard coded in java file as "UMLS_SemNet"

 

 

 

NA

codingScheme.localNameList

No comments

 

 

 

NA

codingScheme.localNameList.

No comments

 

 

 

NA

codingScheme.source

No comments

 

 

 

NA

codingScheme.source.content

No comments

 

 

 

NA

codingScheme.localNameList

No comments

 

 

 

NA

codingScheme.localNameList.

No comments

 

 

 

NA

codingScheme.localNameList

No comments

 

 

 

NA

codingScheme.localNameList.

No comments

 

 

 

NA

codingScheme.localNameList

No comments

 

 

 

NA

codingScheme.localNameList.

No comments

 

 

 

NA

codingScheme.localNameList

No comments

 

 

 

NA

codingScheme.localNameList.

No comments

 

 

 

NA

mappings.supportedFormat

No comments

 

 

 

NA

mappings.supportedFormat.localId

hard coded in java file as "text/plain"

 

 

 

NA

mappings.supportedFormat.uri

hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain"

 

 

 

NA

mappings.supportedAssociation

No comments

SRDEF

RL

 

NA

mappings.supportedAssociation.localId

No comments

 

 

 

NA

mappings.supportedContext

No comments

 

 

 

NA

mappings.supportedSource

No comments

 

 

 

NA

mappings.supportedSource.localId

hard coded in java file as "NLM"

 

 

 

NA

mappings.supportedSource.uri

hard coded in java file as "urn:lsid:nlm.nih.gov"

 

 

 

NA

mappings.supportedHierarchy

No comments

 

 

 

NA

mappings.supportedHierarchy.localId

hard coded in java file as "is_a"

 

 

 

NA

mappings.supportedHierarchy.isForwardNavigable

hard coded as "true"

 

 

 

NA

mappings.supportedHierarchy.rootCode

hard coded as "@"

 

 

 

NA

mappings.supportedHierarchy.associationList

hard coded in java file as "hasSubtype"

 

 

 

NA

mappings.supportedAssociationQualifier

No comments

SRFLD

COL

 

NA

mappings.supportedProperty

No comments

 

 

 

NA

mappings.supportedProperty.localId

If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such.

 

 

 

NA

mappings.supportedProperty.uri

hard coded in java file as ""

 

 

 

NA

mappings.supportedLanguage

No comments

 

 

 

NA

mappings.supportedLanguage.localId

hard coded in java file as "en"

 

 

 

NA

mappings.supportedLanguage.uri

hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en"

 

 

 

NA

mappings.supportedCodingScheme

No comments

 

 

 

NA

mappings.supportedCodingScheme.localId

hard coded in java file as "UMLS_SemNet"

 

 

 

NA

mappings.supportedCodingScheme.uri

hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"

 

 

 

NA

mappings.supportedRepresentationalForm

No comments

 

 

 

NA

mappings.supportedConceptStatus

No comments

 

 

 

NA

mappings.supportedPropertyLink

No comments

 

 

 

NA

mappings.supportedPropertyQualifier

No comments

 

 

 

NA

mappings.supportedDataType

No comments

Entities

RRF File Name

RRF Column Name

RRF Definition

NCI Meta only

LexGrid Model Element

Comments

SRDEF

UI

 

NA

Entity.entityCode

No comments

SRDEF

STY/RL

 

NA

Entity.enitityDescription(inheritance path Entity->versionableAndDescribable)

No comments

 

 

 

NA

Entity.Property

No comments

SRDEF

NH

 

NA

Entity.Property.text.content

No comments

 

 

 

NA

Entity.Property.value.text.dataType

hard coded in java file as "text/plain"

 

 

 

NA

Entity.Property.propertyName

hard coded in java file as "NH"

 

 

 

NA

Entity.Property.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

 

 

 

NA

Entity.presentation

No comments

 

 

 

NA

Entity.presentation.propertyName (inherited from Property)

Hard coded in java file as "STY/RL" or "ABR"

 

 

 

NA

Entity.presentation.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

STY/RL, ABR

 

NA

concept.presentation.text.content

No comments

 

 

 

NA

Entity.presentation.value.text.dataType

hard coded in java file as "text/plain"

 

 

 

NA

Entity.presentation.isPreferred

hard coded in java file as true.

 

 

 

NA

Entity.definition.propertyName (inherited from Property)

Hard coded in java file as "DEF"

 

 

 

NA

concept.definition.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

DEF

 

NA

Entity.definition.text.content

No comments

 

 

 

NA

Entity.definition.value.text.dataType

hard coded in java file as "text/plain"

 

 

 

NA

Entity.definition.isPreferred

hard coded in java file as true.

 

 

 

NA

Entity.comment

No comments

SRDEF

EX

 

NA

Entity.comment.propertyName (inherited from Property)

Hard coded in java file as "EX"

 

 

 

NA

Entity.comment.text.content

 

 

 

 

NA

Entity.comment.value.text.dataType

hard coded in java file as "text/plain"

 

 

 

NA

Entity.comment.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

 

 

 

NA

Entity.instruction

No comments

 

 

 

NA

Entity.instruction.propertyName (inherited from Property)

Hard coded in java file as "UN"

SRDEF

UN

 

NA

Entity.instruction.text.content

No comments

 

 

 

NA

Entity.instruction.value.text.dataType

hard coded in java file as "text/plain"

 

 

 

NA

Entity.instruction.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

Relations

RRF File Name

RRF Column Name

RRF Definition

NCI Meta only

LexGrid Model Element

Comments

SRSTR

RL

 

NA

AssociationPredicate.associationName

In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed

 

 

 

NA

AssociationEnity.isTransitive

hard coded to true if the value of RL is "isa"

SRSTR

RL

 

NA

AssociationEntity.forwardName

Reversed when value of RL is "isa"

SRSTR

STY/RL

 

NA

AssociationSource.sourceEntityCode

Reversed when value of RL is "isa"

SRSTR

STY/RL

 

NA

AssociationTarget.targetEntityCode

No comments

SRDEF

RIN

 

NA

AssociationEntity.reverseName

No comments

SRDEF

DEF

 

NA

AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)

When SRDEF value RT is "RL"

SRSTRE1

UI/STY(first argument)

 

NA

AssociationSource.sourceEntityCode

Reversed when value of RL is "isa"

SRSTRE1

UI/STY(2nd argument)

 

NA

AssociationTarget.targetEntityCode

Reversed when value of RL is "isa"


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