NIH | National Cancer Institute | NCI Wiki  

Error rendering macro 'rw-search'

null

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 9 Next »

Contents

This explains the Operational procedure required to keep Protégé running and publishing data in a clean and well-controlled fashion. There are two aspects to operations.

  • Update of Protégé software
  • Publication of data edited in Protégé

Update of Protégé software

Protégé is an application in active development. On top of the base Protégé, EVS has a number of plugins including

  • NCI Edit tab
  • NCI Workflow tab
  • NCI Code Generator
  • NCI Changes tab
  • Chat tab
  • Prompt tab

As development occurs on this software, it will need to be tested and eventually moved into the production editing environment.

Publication

Publication will take multiple facets.

  • BiomedGT publishing from Protege to the BiomedGT Wiki
  • Publication of NCI Thesaurus to DTS for support of caCORE 3.2
  • Publication of NCI Thesaurus and BiomedGT to LexBIG for support of evsapi 4.0

Publication to BiomedGT Wiki

There are two major areas to be addressed in publication to BiomedGT Wiki from Protégé.

Single concept publishing

This is conceived to be an editor finishing the editing of a concept and clicking a "Publish" button to push data to the Wiki.

Publication of vocabulary structural changes

Occasionally new roles will be added to the vocabulary or, rarely, removed. Properties could be added or have their list values modified. These changes are not things done by editors but are instead done by administrators of the vocabulary. These changes will also need to make their way to the Wiki when they occur.

Publication of NCI Thesaurus to DTS

The caCORE 3.2 will still be supported for many months after we have moved to working on the NCI Thesaurus in Protégé. This will require us to export data from Protégé to an OWL file, then converting this to a vaild Ontylog formatted file for loading into DTS.

Publication of NCI Thesaurus and BiomedGT to LexBIG

The evsapi 4.0 , and versions moving forward, will be supported using LexBIG. The LexBIG application takes the OWL format directly for import. There will be several QA points that need to be implemented in this publication tract. The procedure for publishing data to LexBIG (and DTS) can be found here: BiomedGT Publishing to LexBIG

  • No labels