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This section describes how to use the My Workspace feature which can list any submitted samples, protocols, and publications.

Topics in this section include the following:

My Workspace

When you click the My Workspace option on the caNanoLab menu bar, the My Workspace page appears. As a logged in user, any samples, protocols, and publications that you submitted appear on the page.

You can hide and re-load items into My Workspace by checking the My Samples, My Protocols, and My Publications boxes at the top of the page.

If displayed, you can view (where applicable), edit, delete, and share items of a listed sample, protocol, or publication.

Note

Green rows in My Workspace indicate that someone has shared the item with you. Rows without color are items that you bookmarked and can share with another user or group.

My Workspace Tables

The My Samples, My Protocols, and My Publications tables display the following information.

NameDefinition
Actions

Displays links to View (where applicable), Edit, or Delete the item in that row.

Note

Some protocols listed may not have a View link in the Actions column, because the protocol file is not available for viewing.

Name or Title

The name of the sample, protocol, or publication defined for the item in caNanoLab.

Submission Status

Includes:

  • Pending indicates that the item was submitted for curator review.
  • Approved indicates that the item was approved by the curator and made publicly available.
  • In Draft indicates that the item was submitted by the owner but not yet reviewed by the curator.  
  • Retracted indicates that the item was deleted or the access changed so that the item is no longer publicly available.

Created Date

The date on which the item was initially submitted in caNanoLab.

Access

Indicates the access defined for the current sample, protocol, or publication.

If the column contains the following information, Owner, Shared with: username, username, it is an item that you submitted as Owner:

  • Owner is your user name.
  • Shared with is the user with which you shared the item.

If the column contains the following information, Shared by: username, it is an item that another user has shared with you, and the row appears in green.

  • Shared by: and your user name.

Note

For a Publication, there is also a Publication ID which, if available, click the hyperlink to display information at PubMed.gov.

Managing Items in My Workspace

The following table lists and describes the sample tasks you can perform from the My Workspace page.

TaskProcedure
Viewing

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Updating
The Update Sample page enables you to update sample information, update access to the sample, and generate data availability access.

Updating data after it is Public

Once data is made Public, you can update the data, but it will be retracted from Public, and you will need to submit it to the curator again for review.

  1. Fill in the following information as needed.

    To export sample information, refer to Exporting Sample Information to JSON or XML - include.
    General Information FieldsDefinition

    Sample Name*

    The name assigned to the sample (required).

    Point of Contact*

    The site that is the source of the sample (required).

    Click Edit to edit current information. Click Add to add another point of contact. 

    When you are done editing or adding the point of contact, confirm that you have read and understood the following message, and click Save. 

    Enter only public business-related contact information into these fields (such as institutional points of contact used in public publications). Do not add private contact information here, as this information will be made available to the public viewing the system. The system will contact you yearly, via the email address you provide, to ask if you would like to correct, update, or delete this information. If you would like to update it earlier, contact us via caNanoLab-Support@isb-cgc.org.

    Keywords

    Keyword(s) the submitter selected to associate with the selected sample.

    Access to the Sample

    For more information, refer to Sharing a Sample with a User or Group or Making a Sample Public. 

    If you do not add access

    If you do not add access, this item remains private and only you, the owner, can view and/or modify it.

    Data Availability Metrics

    For more information refer to Generating Data Availability Metrics. 

    If you paste text into an input field, review it before submitting the text to the system. Make sure the formatting (such as superscript, subscript, bold, and Italics), Greek letters, and other special characters appear as expected. For details, refer to Correcting Special Text. 


  2. Click Update when you are done editing the sample.

    You can also Copy and Delete the sample from the Update Sample page.

Sharing

To share a sample, click Edit and the Update page opens.

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Deleting

Note

Delete removes the sample from the caNanoLab database, executed behind the scenes at a scheduled time.

To delete a sample

  1. Perform a sample search.
  2. On the search results page, click Edit in the Actions column.
  3. From the Update Sample page, click Delete.
  4. Confirm the deletion.

Managing Protocols in My Workspace

The following table lists and describes the protocols tasks you can perform from the My Favorites page.

TaskProcedure
Viewing

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Updating

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Deleting

Delete removes the protocol from the caNanoLab database, executed behind the scenes at a scheduled time.

To delete a protocol

  1. Perform a search.
  2. On the search results, click Edit in the Actions column.
  3. From the Edit Protocol page, click Delete in the lower-left corner of the window.
  4. Confirm the deletion.

Sharing

To share a protocol, click Edit and the Update page opens.

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Managing Publications in My Workspace

The following table lists and describes the publications tasks you can perform from the My Favorites page.

TaskProcedure
Viewing

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Updating

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Deleting

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Sharing

To share a publication, click Edit and the Update page opens.

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