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As a logged in user, when you click the My Workspace option on the caNanoLab menu bar, the My Workspace page lists any samples, protocols, and publications that you submitted, as well as any items that were shared with you. Shared items appear in green. You can view (where applicable), edit, delete from the database, and share these items from this page.

All samples, protocols, and publications are shown by default, but you can hide items by clicking the Samples, Protocols, and Publications boxes at the top of the page.

My Workspace Tables

Note

Green rows in My Workspace indicate that someone has shared the item with you. Rows without color are items that you submitted and can share with another user or group.

The My Samples, My Protocols, and My Publications tables display the following information.

NameDefinition
Actions

Displays links to View (where applicable), Edit, or Delete the item from the database.

Note

If there is no View link in the Actions column for a protocol, the protocol file is not available for viewing.

If there is no View link in the Actions column for a publication, there is no associated publication PubMed ID at the PubMed.gov web site.

Name or Title

The name of the sample, protocol, or publication defined for the item in caNanoLab.

Submission Status

Includes the following.

  • Pending indicates an item submitted for curator review.
  • Approved indicates an item approved by the curator and made publicly available.
  • In Draft indicates an item submitted by the owner but not yet reviewed by the curator.  
  • Retracted indicates thtat the item was deleted, the access was changed, or it is no longer publicly available.

Created Date

The date on which the item was initially submitted in caNanoLab.

Access

Indicates the access defined for the current sample, protocol, or publication.

If the column contains the following information, Owner, Shared with: username, username, it is an item that you submitted as Owner:

  • Owner is your user name.
  • Shared with is the username following the comma and the user with which you shared the item.

If the column contains the following information, Shared by: username, it is an item that another user has shared with you, and the row appears in green.

  • Shared by is your user name.

Note

For a Publication, there is also a Publication ID hyperlink which, if available, you can click to display information at PubMed.gov web site.

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Managing Items in My Workspace

The following sections describe what actions you can perform on samples, protocols, and publications listed in My Workspace.

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Samples

The following table lists and describes the sample tasks you can perform from the My Workspace page.

TaskProcedure
View

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Edit
The Update Sample page enables you to update sample information, update access to the sample, and generate data availability access.

Updating data after it is Public

Once data is made Public, you can update the data, but it will be retracted from Public, and you will need to submit it to the curator again for review.

  1. Fill in the following information as needed.

    To export sample information, refer to Exporting Sample Information to JSON or XML - include.
    General Information FieldsDefinition

    Sample Name*

    The name assigned to the sample (required).

    Point of Contact*

    The site that is the source of the sample (required).

    Click Edit to edit current information. Click Add to add another point of contact. 

    When you are done editing or adding the point of contact, confirm that you have read and understood the following message, and click Save. 

    Enter only public business-related contact information into these fields (such as institutional points of contact used in public publications). Do not add private contact information here, as this information will be made available to the public viewing the system. The system will contact you yearly, via the email address you provide, to ask if you would like to correct, update, or delete this information. If you would like to update it earlier, contact us via caNanoLab-Support@isb-cgc.org.

    Keywords

    Keyword(s) the submitter selected to associate with the selected sample.

    Access to the Sample

    For more information, refer to Sharing a Sample with a User or Group or Making a Sample Public. 

    If you do not add access

    If you do not add access, this item remains private and only you, the owner, can view and/or modify it.

    Data Availability Metrics

    For more information refer to Generating Data Availability Metrics. 

    If you paste text into an input field, review it before submitting the text to the system. Make sure the formatting (such as superscript, subscript, bold, and Italics), Greek letters, and other special characters appear as expected. For details, refer to Correcting Special Text. 


  2. Click Update when you are done editing the sample.

    You can also Copy and Delete the sample from the Update Sample page.

Delete

Note

Delete removes the sample from the caNanoLab database, executed behind the scenes at a scheduled time.

To delete a sample

  1. Perform a sample search.
  2. On the search results page, click Edit in the Actions column.
  3. From the Update Sample page, click Delete.
  4. Confirm the deletion.

ShareTo share a sample, click Edit in the Actions column. The Update Sample page opens. See Sharing and Change Access to a Sample for additional instructions.

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Protocols

The following table lists and describes the protocols tasks you can perform from the My Workspace page.

TaskProcedure
View

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Edit

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Delete

Delete removes the protocol from the caNanoLab database, executed behind the scenes at a scheduled time.

To delete a protocol

  1. Perform a search.
  2. On the search results, click Edit in the Actions column.
  3. From the Edit Protocol page, click Delete in the lower-left corner of the window.
  4. Confirm the deletion.

Share

To share a protocol, click Edit in the Actions column. The Update Protocol page opens. See Sharing and Changing Access to a Protocol for additional instructions.

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Publications

The following table lists and describes the publications tasks you can perform from the My Workspace page.

TaskProcedure
View

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Edit

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Delete

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ShareTo share a publication, click Edit in the Actions column. The Update Publication page opens. See Sharing and Changing Access to a Publication for additional instructions.

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