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Overview

As an integrating/translational platform, caIntegrator depends on service-level or API interfaces for several other applications in the caBIG suite of tools.  Many of these applications have ongoing development and deploy multiple releases each year.  In order to better plan for potential breakage or retest necessary in caIntegrator, the team undertook an analysis of these dependencies and the planned release schedules for each.  This document highlights dependencies and serves as a place to discuss any breakage to caIntegrator and to schedule this into an iteration.

Application Dependencies

The following applications are used by caIntegrator and require some sort of dependency management.  This table will track upcoming releases and any known changes or retest required for these releases.  This work can then be scheduled into an upcoming caIntegrator iteration.

Application / Service

caIntegrator
Version
(as of R1.2)

Next
Planned Version

Projected
Release
Date

Interface Summary / Needed caIntegrator Changes

Planned
Iteration

caArray

2.4

2.5

TBD

Use Java RMI-based "external model" API

TBD

NBIA

4.4

4.5

10/31/10

Use caGrid data service for CQL queries and caGrid grid file transfer service

TBD

AIM

1.5

3.0

1/31/11

Use caGrid data service for CQL queries.  Custom serialization/deserialization client used.

TBD

GenePattern

3.2.3

TBD

TBD

caGrid analytical service used for genomic algorithms

TBD

Bioconductor
(caDNAcopy)

TBD

TBD

TBD

caGrid anaytical service for caDNAcopy used for copy number data during study deployment

TBD

caBio

4.2

TBD

TBD

caGrid service used for keyword or pathway based gene search.

TBD


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