Coding Scheme
RRF File Name |
RRF Column Name |
RRF Definition |
NCI Meta only |
LexGrid Model Element |
Comments |
|---|---|---|---|---|---|
|
|
|
NA |
codingScheme.representsVersion |
No comments |
|
|
|
NA |
codingScheme.codingSchemeName |
hard coded in java file as "UMLS_SemNet" |
|
|
|
NA |
codingScheme.formalName |
hard coded in java file as "UMLS Semantic Network" |
|
|
|
NA |
codingScheme.defaultLanguage |
hard coded in java file as "en" |
|
|
|
NA |
codingScheme.approxNumConcepts |
hard coded in java file as |
|
|
|
NA |
codingScheme.entityDescription |
hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus." |
license.txt |
|
|
NA |
codingScheme.copyright |
Read from license.txt file or hard coded reference in java file |
|
|
|
NA |
codingScheme.codingSchemeURI |
hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
|
|
|
NA |
codingScheme.relations.containerName |
hard coded in java file as "relations" |
|
|
|
|
|
|
|
|
|
NA |
codingScheme.localNameList |
No comments |
|
|
|
NA |
codingScheme.localNameList. |
hard coded in java file as "UMLS_SemNet" |
|
|
|
NA |
codingScheme.localNameList |
No comments |
|
|
|
NA |
codingScheme.localNameList. |
No comments |
|
|
|
NA |
codingScheme.source |
No comments |
|
|
|
NA |
codingScheme.source.content |
No comments |
|
|
|
NA |
codingScheme.localNameList |
No comments |
|
|
|
NA |
codingScheme.localNameList. |
No comments |
|
|
|
NA |
codingScheme.localNameList |
No comments |
|
|
|
NA |
codingScheme.localNameList. |
No comments |
|
|
|
NA |
codingScheme.localNameList |
No comments |
|
|
|
NA |
codingScheme.localNameList. |
No comments |
|
|
|
NA |
codingScheme.localNameList |
No comments |
|
|
|
NA |
codingScheme.localNameList. |
No comments |
|
|
|
NA |
mappings.supportedFormat |
No comments |
|
|
|
NA |
mappings.supportedFormat.localId |
hard coded in java file as "text/plain" |
|
|
|
NA |
mappings.supportedFormat.uri |
hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain" |
|
|
|
NA |
mappings.supportedAssociation |
No comments |
SRDEF |
RL |
|
NA |
mappings.supportedAssociation.localId |
No comments |
|
|
|
NA |
mappings.supportedContext |
No comments |
|
|
|
NA |
mappings.supportedSource |
No comments |
|
|
|
NA |
mappings.supportedSource.localId |
hard coded in java file as "NLM" |
|
|
|
NA |
mappings.supportedSource.uri |
hard coded in java file as "urn:lsid:nlm.nih.gov" |
|
|
|
NA |
mappings.supportedHierarchy |
No comments |
|
|
|
NA |
mappings.supportedHierarchy.localId |
hard coded in java file as "is_a" |
|
|
|
NA |
mappings.supportedHierarchy.isForwardNavigable |
hard coded as "true" |
|
|
|
NA |
mappings.supportedHierarchy.rootCode |
hard coded as "@" |
|
|
|
NA |
mappings.supportedHierarchy.associationList |
hard coded in java file as "hasSubtype" |
|
|
|
NA |
mappings.supportedAssociationQualifier |
No comments |
SRFLD |
COL |
|
NA |
mappings.supportedProperty |
No comments |
|
|
|
NA |
mappings.supportedProperty.localId |
If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such. |
|
|
|
NA |
mappings.supportedProperty.uri |
hard coded in java file as "" |
|
|
|
NA |
mappings.supportedLanguage |
No comments |
|
|
|
NA |
mappings.supportedLanguage.localId |
hard coded in java file as "en" |
|
|
|
NA |
mappings.supportedLanguage.uri |
hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en" |
|
|
|
NA |
mappings.supportedCodingScheme |
No comments |
|
|
|
NA |
mappings.supportedCodingScheme.localId |
hard coded in java file as "UMLS_SemNet" |
|
|
|
NA |
mappings.supportedCodingScheme.uri |
hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
|
|
|
NA |
mappings.supportedRepresentationalForm |
No comments |
|
|
|
NA |
mappings.supportedConceptStatus |
No comments |
|
|
|
NA |
mappings.supportedPropertyLink |
No comments |
|
|
|
NA |
mappings.supportedPropertyQualifier |
No comments |
|
|
|
NA |
mappings.supportedDataType |
No comments |
Entities
RRF File Name |
RRF Column Name |
RRF Definition |
NCI Meta only |
LexGrid Model Element |
Comments |
|---|---|---|---|---|---|
SRDEF |
UI |
|
NA |
Entity.entityCode |
No comments |
SRDEF |
STY/RL |
|
NA |
Entity.enitityDescription(inheritance path Entity->versionableAndDescribable) |
No comments |
|
|
|
NA |
Entity.Property |
No comments |
SRDEF |
NH |
|
NA |
Entity.Property.text.content |
No comments |
|
|
|
NA |
Entity.Property.value.text.dataType |
hard coded in java file as "text/plain" |
|
|
|
NA |
Entity.Property.propertyName |
hard coded in java file as "NH" |
|
|
|
NA |
Entity.Property.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
|
|
|
NA |
Entity.presentation |
No comments |
|
|
|
NA |
Entity.presentation.propertyName (inherited from Property) |
Hard coded in java file as "STY/RL" or "ABR" |
|
|
|
NA |
Entity.presentation.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
SRDEF |
STY/RL, ABR |
|
NA |
concept.presentation.text.content |
No comments |
|
|
|
NA |
Entity.presentation.value.text.dataType |
hard coded in java file as "text/plain" |
|
|
|
NA |
Entity.presentation.isPreferred |
hard coded in java file as true. |
|
|
|
NA |
Entity.definition.propertyName (inherited from Property) |
Hard coded in java file as "DEF" |
|
|
|
NA |
concept.definition.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
SRDEF |
DEF |
|
NA |
Entity.definition.text.content |
No comments |
|
|
|
NA |
Entity.definition.value.text.dataType |
hard coded in java file as "text/plain" |
|
|
|
NA |
Entity.definition.isPreferred |
hard coded in java file as true. |
|
|
|
NA |
Entity.comment |
No comments |
SRDEF |
EX |
|
NA |
Entity.comment.propertyName (inherited from Property) |
Hard coded in java file as "EX" |
|
|
|
NA |
Entity.comment.text.content |
|
|
|
|
NA |
Entity.comment.value.text.dataType |
hard coded in java file as "text/plain" |
|
|
|
NA |
Entity.comment.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
|
|
|
NA |
Entity.instruction |
No comments |
|
|
|
NA |
Entity.instruction.propertyName (inherited from Property) |
Hard coded in java file as "UN" |
SRDEF |
UN |
|
NA |
Entity.instruction.text.content |
No comments |
|
|
|
NA |
Entity.instruction.value.text.dataType |
hard coded in java file as "text/plain" |
|
|
|
NA |
Entity.instruction.propertyId |
Generated value for property using "P" concatenated with a steadily incremented numerical value. |
Relations
RRF File Name |
RRF Column Name |
RRF Definition |
NCI Meta only |
LexGrid Model Element |
Comments |
|---|---|---|---|---|---|
SRSTR |
RL |
|
NA |
AssociationPredicate.associationName |
In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed |
|
|
|
NA |
AssociationEnity.isTransitive |
hard coded to true if the value of RL is "isa" |
SRSTR |
RL |
|
NA |
AssociationEntity.forwardName |
Reversed when value of RL is "isa" |
SRSTR |
STY/RL |
|
NA |
AssociationSource.sourceEntityCode |
Reversed when value of RL is "isa" |
SRSTR |
STY/RL |
|
NA |
AssociationTarget.targetEntityCode |
No comments |
SRDEF |
RIN |
|
NA |
AssociationEntity.reverseName |
No comments |
SRDEF |
DEF |
|
NA |
AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable) |
When SRDEF value RT is "RL" |
SRSTRE1 |
UI/STY(first argument) |
|
NA |
AssociationSource.sourceEntityCode |
Reversed when value of RL is "isa" |
SRSTRE1 |
UI/STY(2nd argument) |
|
NA |
AssociationTarget.targetEntityCode |
Reversed when value of RL is "isa" |
