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Document Information

Author:  Craig Stancl, Scott Bauer, Cory Endle
Email: craig.stancl2@nih.gov, scott.bauer@nih.gov,  cory.endle@nih.gov
Team:  LexEVS
Contract:   16X237
Client:  NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services

Contents of this Page

The purpose of this document is to document the 2017.12 technical face to face meeting details between the NCI and the LexEVS Team.

2017  December Face-to-Face Meeting Notes 

Tuesday, December 5th, 2017

TimeLocationTopicsParticipantsResources
9:00 AM - 11:00 AM4-W-034
EVS Status and Future Direction

Discuss EVS current state, trends, and future directions

  • Larry to give brief overview of EVS infrastructure, resources, and services.
  • Review overall technical workflow and architecture.
  • Group discussion of future possible directions and priorities.
Broad cross-EVS participationEVS Project Architecture

Attendees: 

Jason, Scott Bauer, Larry Wright, Cory Endle, Kim Ong, Tracy Safran, Rob Wynn, Gilberto Fragoso, Margaret Haber, Kumar, Sherri De Coronado, John Campbell, Ron, Luba

 

Discussion Points:

  • House keeping Items
    • Reviewed agenda and approved - unless there are changes along the way.
    • WebEx will be live all day.
    • Goal is to record key tasks and wikis
  • Goal is to set context for the rest of the meetings this week and to start identifying the issues to be addressed.  
  • Larry would like to start to complete the complete EVS Project Architecture (including LexEVS)
  • General workflow for architecture:
    • Gather terminology content → protege and meme → loaded into LexEVS terminology service → accessed via java api, rest service api, browsers
    • Architecture now needs to include the triple store database and usage (REST API and native REST API).  This service is to support clinical trials (CTRP).  Ability to make changes into the production service was a driving factor in going to TripleStore architecture.  Loading into triplestore can be done nightly if needed.  Currently the loads have been nightly.
    • OBO is currently being looked as as a third delivery channel.  
    • Expected to have expanded use of services and downloads
      • Adverse events were the most downloads  - and then used and built in other systems (CDISC and FDA, etc).
    • Report Writer extracts value sets from LexEVS
      • Current work happening to create a SPARQL based report writer. Planned for early February.
        • This would be only on QA team.
        • External use would require a security layer (doesn't exist today)
        • Gilberto noted that report writer cannot currently take a search and return result set (with preferred names).  Noted this is "simple search" and could also be part of the term browser.
        • Existing templates should be able to be run without authentication.
    • The TripleStore still cannot provide all the terminology data needed for EVS and is stored in LexEVS. 
    • Mappings - need to determine how to capture and allow access to mappings.  The LexEVS model and triplestore model do not provide the needed flexibility today.

 

Decision Points:

 

TimeLocationTopicsParticipantsResources
11:00 AM - 12:00 PM4-W-034
EVS Project Architecture

EVS Project Architecture Review and Update

  • Review overall architecture and provide updates
Broad cross-EVS participationEVS Project Architecture

Attendees: 

Discussion Points:

Decision Points:

 

TimeLocationTopicsParticipantsResources
1:00 PM - 2:00 PM 5-W-032
User Group Discussion - caDSR

User Teams to share how they are using EVS and  discuss requirements/priorities for the future.

  • APIs: Java, REST (CTS2 or 3-store), SPARQL, FTP
  • Backwards compatibility of server/client/data releases
  • Incl: Java/jar file issues and future
  • Incl: New terminology server API/content/other needs.
caDSR contact - Denise, Philippa, developers 

Attendees: 

Discussion Points:

Decision Points:

 

TimeLocationTopicsParticipantsResources
2:00 PM - 3:00 PM  5-W-032
User Group Discussion - FDA and CDISC

User Teams to share how they are using EVS and  discuss requirements/priorities for the future.

  • APIs: Java, REST (CTS2 or 3-store), SPARQL, FTP
  • Backwards compatibility of server/client/data releases
  • Incl: Java/jar file issues and future
  • Incl: New terminology server API/content/other needs.

Editors

Liz, Erin, Brenda

 

Attendees: 

Discussion Points:

Decision Points:

 

TimeLocationTopicsParticipantsResources

3:00 PM - 4:00 PM

5-W-032
User Group Discussion - CTRP / CTS-API

User Teams to share how they are using EVS and  discuss requirements/priorities for the future.

  • APIs: Java, REST (CTS2 or 3-store), SPARQL, FTP
  • Backwards compatibility of server/client/data releases
  • Incl: Java/jar file issues and future
  • Incl: New terminology server API/content/other needs.
CTRP / CTS-API - managers,  developers, Tiger team (Gisele, Samantha, David, Brian, Peter, Tracy, Jason, others) 

Attendees: 

Discussion Points:

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Wednesday, December 6th, 2017

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Thursday, December 7th, 2017

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