Frequently Asked Questions (FAQ) about caArray: Installation, Integration and Usage.

caArray Community Contribution

• caarray055 Automated File Uploading Process
• Caarray054 A step-by-step guide to install and use caArray Importer

caArray Installation/Upgrade

• caarray005 Do I need to create an empty database prior to caArray or Other LSD Tool Installations?
• caarray006 Step by Step Guide to Install caArray 2.x Grid Service (Applicable to: caArray 2.2 & Under)
• caarray011 Invalid Login or No Application found Error When Login UPT
• caarray015 Why am I not able to connect to my caArray 2.2.0+ application using localhost in URL? / Why can't I connect to a remote caArray 2.2.0+ application but can do so locally?
• caarray020 How to configure Eclipse for caArray?
• caarray026 Can I still change the port number after the caArray installation?
• caarray027 How to avoid JBOSS port conflict between applications such as caArray and caTissue Suite ?
• caarray028 How to point caArray grid service to one of the non-production grid indexing service ?
• Caarray030 Which ports are required for caArray to run?
• Caarray031 How to install caArray on multiple servers?
• Caarray044 Should my caArray grid service be Analytical or Data Service?
• Caarray045 Unable to Send User Registration Confirmation e-Mail.
• Caarray053 How to remove the lock on my UPT superuser account?
• caarray057 I deployed caArray in Eclipse but got exception when I tested the caArray. Why?
• caarray058 Is there any guideline for Applying OS patching and Java updates on servers running caArray?
• Caarray059 Where to download caArray 2.3.1 GUI Installer?
• Caarray062 Where to get a complete list of caArray service URLs?

• caarray066 The installation for caArray installation /Upgrade failed. Where can I find the error log?
• caarray070 I was installing caArray with GUI installer on my PC by double-clicking on the GUI installer icon. I got Java version error. Why and How to fix it?
• caarray077 How to increase the time-out period when running CQL queries?
• caarray079 Are there secure Grid services for caArray?
• Caarray083 Can we delete the legacy file during caArray upgrading ?

caArray Usage

• Caarray049 Introduction to caArray: a High-level Workflow
• Caarray050 Introduction to caArray: Browse & Search caArray Repository
• Caarray078 What browsers does caArray support?

• Caarray029 How to Change caArray Admin e-mail After the Installation?
• Caarray035 How to Choose the Access Role Offered by caArray?

• caarray065 Can we amend the ownership for a deleted user's experiment?
• caarray084 Can users change their passwords in caArray?

• Caarray010 Where are the Array Design Files for caArray?
• Caarray036 Working with Array Design File in caArray.
• caArrayDemo-004 Using caArray: Uploading Array Design File
• Caarray052 I would like to download an array design file, but I can't find it in caArray. Why?
• Caarray074 Can I give the design file a different name while I upload the file in caArray?

• Caarray007 What are the MAGE-TAB Files?
• Caarray008 Annotation Tab vs MAGE-TAB Annotation Files in caArray
• Caarray009 A Checklist: Building caArray's MAGE-TAB Annotation Files
• caArrayDemo-001 How to load MAGE-TAB data into caArray
• Caarray060 How to export experiment annotation and data files into MAGE-TAB and GEO SOFT formats?
• caarray080 A step-by-step guide to Create MAGE-TAB template specific to RPLA Project

• Caarray002 How to Upload MicroArray Gene Expression Data into caArray?
• Caarray013 Is There Any Size or Format Limitation on the Files Uploaded to caArray?
• Caarray014 Which Files Can Be Uploaded into caArray?
• Caarray016 Which File Can Be Parsed into caArray? What is The Benefit of File Parsing?
• Caarray017 caArray Status of Importing: Imported vs. Imported Not Parsed.
• Caarray018 caArray File Validation Process
• Caarray051 Which columns in Illumina expression csv array design files are acceptable in caArray?
• caarray056 How to Import Affy .TXT file into caArray
• Caarray061 What are the differences among the annotation options that are available when importing data?
• Caarray067 Zip file uncompression failed. Why?
• Caarray076 How can I upload and store QC data in caArray?
• Caarray082 Datafile is imported, but it is not downloadable. Why?

Caarray038 *caArray Experiment Management

• Caarray023 Can multiple users upload microarray datafiles under the same experiment?
• Caarray024 Does the account with caArray system administrator role have access to all experimental Data?
• Caarray025 Does caArray Have Version Control on Uploaded Files?
• Caarray034 Can I edit my experiment that has already been made public ?
• Caarray032 Can I recover a mistakenly deleted experiment from a caArray database backup?
• Caarray043 Manage the public visibility of a caArray experiment
• Caarray071 How to check whether my caArray data is published on caGrid?
• Caarray072 Can I delete an experiment with a status "In Progress"?

Caarray046 *Management Experiment Ownership

• Caarray022 Can I change the ownership of the experiment in caArray?

• Caarray012 The Organism List in caArray and How to Add One Manually
• caArrayDemo-002 How to Use caArray to Share Pre-Publishing Data?
• Caarray077 How to increase time-out period when running CQL queries?

• caArray068 What information can we find in an audit file?

caArray Integration with Other Applications

caArray /UPT Integration

Caarray047 Create caArray account with UPT

• Caarray001 Is UPT required for caArray?
• Caarray003 How to create caArray user with UPT?
• Caarray021 Login caArray with LDAP Authentication
• caArrayDemo-005 Using UPT: Set up Application & Create caArray Users
• Caarray042 Is "user password" a required field for new user creation in UPT ?
• Caarray075 UPT user group/caArray collaboration group clarification

caArray /geWorkbench Integration

• Caarray004 Can I access geWorkbench application from caArray?
• Caarray033 What is the version compatibility between geWorkbench and caArray?
• caArrayDemo-003 - Using geWorkbench to Remote Access caArray Data

caArray /caIntegrator Integration

• Caarray081 Can caArray and caIntegrator2 share the same version of UPT application?

caArray /caTissue Integration

---

Still can not find your questions yet? Please try one of following online helps:

Go Back to caArray Knowledge Base