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1) Integrated Azure's Kubernetes \ Storage \ Networks \ VM pools \ and Docker Registry pieces with CodaLab with the help from Patrick Flickinger. 

  • UPDATE: Codalab is loaded into kubernetes so that we can minimize VMs that will be running. While this should streamline things we are having huge amounts of trouble getting the ingress-nginx helm chart working properly. Also the cert-manager chart integration isn't quite working. Patrick has determined that this is related to incorrect documentation the the Microsoft side. 
Planned for next month

1) We make the VM resource pool contain GPUs, but we are deploying into US West 2 right now and it needs to be US East for compatibility with this thing called an "Express Route" from Partners to securely transfer data. It is only available in the US East and US East 2 zones.

2) Test Phase ends  9/3 and participant finalists will need their Dockers run on the CBIT platform as well as at MGH.

  • UPDATE

3) Upload Carolyn's video to Medici website, and need to change it over to youtube hosting.

Comments

Things that went well:

  • Integration with Azure infrastructure:
  • Integration with Okta:
  • Miccai Test Phase is finishing up and we have 10 total submissions:
  • With an active forum:
Comments

Things that could be improved:

  • Azure integration is pretty basic still. We need to test a real algorithm on real GPUs.
  • What we want to see above is more columns for characterizing the performance of the algorithm: ['AUC','Sensitivity','Specificity','Positive Predictive Value (PPV)']. We want to allow participants to train and get an output of their model so far. 



MeetingDate
Bi-weekly Meeting #1

 

Bi-weekly Meeting #2

 

Milestones

DescriptionDate
  • Azure integration
  • Okta Integration
  • Miccai Test Phase is completed in a day (9/4)


Task

DescriptionResolutionStatusCreation DateClose Date

Get sample pneumonia algorithm running on Azure VM

Need to increase quotapending

 

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Get pools of VMs in Azure integration to be based on GPU machines


Depends on above taskpending

 

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Risks

DescriptionMitigationRankStatusCreation DateRealizationClose Date
If we can't get GPU machines hooked up to Kebernetes in Azure then we can't run algorithmsExecute above tasks and get help from Patrick and or Azure support team1pending

 

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