caArray Community Contribution

• caArray054 Step-By-Step Guide to Install and Use caArray Importer A step-by-step guide to install and use caArray Importer

caArray Installation and Upgrade

• caArray005 - Do I need to create an empty database prior to caArray or other LSD tool installations? Do I need to create an empty database prior to caArray or Other LSD Tool Installations?
• caArray006 - Step by Step Guide to Install caArray 2.x Grid Service (caArray 2.2 and Under) Step by Step Guide to Install caArray 2.x Grid Service (Applicable to: caArray 2.2 & Under)
• caArray011 Invalid Login or No Application found Error When Login UPT
• caArray015 Why am I not able to connect to my caArray 2.2.0+ application using localhost in URL? Why can't I connect to a remote caArray 2.2.0+ application but can do so locally?
• caArray020 How to configure Eclipse for caArray?
• caArray026 Can I still change the port number after the caArray installation?
• caArray027 How to avoid JBOSS port conflict between applications such as caArray and caTissue Suite?
• caArray028 How to point caArray grid service to one of the non-production grid indexing service?
• caArray030 Which ports are required for caArray to run?
• caArray031 How to install caArray on multiple servers?
• caArray044 Should my caArray grid service be Analytical or Data Service?
• caArray045 Unable to Send User Registration Confirmation e-Mail.
• caArray053 How to remove the lock on my UPT superuser account?
• caArray057 I deployed caArray in Eclipse but got exception when I tested the caArray. Why?
• caArray058 Is there any guideline for Applying OS patching and Java updates on servers running caArray?
• caArray059 Where to download caArray 2.3.1 GUI Installer?
• caArray062 Where to get a complete list of caArray service URLs?
• caArray066 The installation for caArray installation or Upgrade failed. Where can I find the error log?
• caArray070 I was installing caArray with GUI installer on my PC by double-clicking on the GUI installer icon. I got Java version error. Why and How to fix it?
• caArray077 How to increase the time-out period when running CQL queries?
• caArray079 Are there secure Grid services for caArray?
• caArray083 Can we delete the legacy file during caArray upgrading ?

caArray Usage

• caArray049 Introduction to caArray: a High-level Workflow
• caArray050 Introduction to caArray: Browse and Search caArray Repository
• caArray078 What browsers does caArray support?
• caArray041 caArray Account Management
• caArray029 How to Change caArray Admin e-mail After the Installation?
• caArray035 How to Choose the Access Role Offered by caArray?
• caArray065 Can we amend the ownership for a deleted user's experiment?
• caArray084 Can users change their passwords in caArray?
• caArray039 caArray Array Design File
• caArray010 Where are the Array Design Files for caArray?
• caArray036 Working with Array Design File in caArray.
• caArrayDemo-004 Using caArray: Uploading Array Design File
• caArray052 I would like to download an array design file, but I can't find it in caArray. Why?
• caArray074 Can I give the design file a different name while I upload the file in caArray?
• caArray037 MAGE-TAB Files
• caArray007 - What are the MAGE-TAB Files? What are the MAGE-TAB Files?
• caArray008 - How do I use the Annotation Tab versus MAGE-TAB Annotation Files in caArray? Annotation Tab vs MAGE-TAB Annotation Files in caArray
• caArray009 - Checklist for Building caArray's MAGE-TAB Annotation Files A Checklist: Building caArray's MAGE-TAB Annotation Files
• caArrayDemo-001 How to load MAGE-TAB data into caArray
• caArray060 How to export experiment annotation and data files into MAGE-TAB and GEO SOFT formats?
• caArray080 A step-by-step guide to Create MAGE-TAB template specific to RPLA Project
• caArray019 caArray File Loading Process
• caArray 002 - How do I upload MicroArray Gene Expression Data into caArray? How to Upload MicroArray Gene Expression Data into caArray?
• caArray013 Is There Any Size or Format Limitation on the Files Uploaded to caArray?
• caArray014 Which Files Can Be Uploaded into caArray?
• caArray016 Which File Can Be Parsed into caArray? What is The Benefit of File Parsing?
• caArray017 caArray Status of Importing: Imported vs. Imported Not Parsed.
• caArray018 caArray File Validation Process
• caArray051 Which columns in Illumina expression csv array design files are acceptable in caArray?
• caArray056 How to Import Affy .TXT file into caArray
• caArray061 What are the differences among the annotation options that are available when importing data?
• caArray067 Zip file uncompression failed. Why?
• caArray076 How can I upload and store QC data in caArray?
• caArray082 Datafile is imported, but it is not downloadable. Why?
• caArray086 What are the columns that are required for an Illumina csv data file?
• caArray038 caArray Experiment Management
• caArray023 Can multiple users upload microarray datafiles under the same experiment?
• caArray024 Does the account with caArray system administrator role have access to all experimental Data?
• caArray025 Does caArray Have Version Control on Uploaded Files?
• caArray034 Can I edit my experiment that has already been made public?
• caArray032 Can I recover a mistakenly deleted experiment from a caArray database backup?
• caArray043 Manage the public visibility of a caArray experiment
• caArray071 How to check whether my caArray data is published on caGrid?
• caArray072 Can I delete an experiment with a status "In Progress"?
• caArray046 Management Experiment Ownership*
• caArray022 Can I change the ownership of the experiment in caArray?
• caArray040 caArray Global Settings
• caArray012 The Organism List in caArray and How to Add One Manually
• caArrayDemo-002 How to Use caArray to Share Pre-Publishing Data?
• caArray077 How to increase time-out period when running CQL queries?
• caArray100 caArray Audit Trail
• caArray068 What information can we find in an audit file?

caArray Integration with Other Applications

caArray and UPT Integration

• caArray047 Create caArray account with UPT
• caArray 001 - Is UPT required for caArray or other application tools in LSD Bundle? Is UPT required for caArray?
• caArray 003 - How do I create a caArray user with UPT? How to create caArray user with UPT?
• caArray021 Login caArray with LDAP Authentication
• caArrayDemo-005 Using UPT: Set up Application & Create caArray Users
• caArray042 Is "user password" a required field for new user creation in UPT?
• caArray075 UPT user group/caArray collaboration group clarification
• caArray086 UPT was installed successfully but I could not log in as the super user. Why?

caArray and geWorkbench Integration

• caArray004 - Can I access the geWorkbench application from caArray? Can I access geWorkbench application from caArray?
• caArray033 What is the version compatibility between geWorkbench and caArray?
• caArrayDemo-003 - Using geWorkbench to Remote Access caArray Data

caArray and caIntegrator Integration

• caArray081 Can caArray and caIntegrator2 share the same version of UPT application?

caArray and caTissue Integration

No FAQ at this time.

For more information

Still can not find your questions yet? Please try one of following online resources:

caGrid Trouble Shooting

UPT and CSM FAQs