LexEVS Meeting Minutes - 2023.10.11

Agenda - Wiki was down for meeting so minutes recorded in Word and pasted in. This has resulted in some formatting changes for this page.

EVS Discussion

Open System Tickets

Ticket	Description	Actions, Update
NCI-SCTASK0750465	Security team has flagged EVS stage host( nciws-p803) for JQuery vulnerability with full details as per below.	JQuery – false positive? Non issue? None of the items from text scan seem like actual jQuery. Action item: Jason to reach out to systems. Will check if there is an existing ticket, possibly enter ticket if needed.
NCI-RITM0473138	OUTAGE: Discuss DOS strategy, tactics with Systems	STATUS Denial of service issue – Shiv presented issue to directors for feedback. Follow-up meetings to be scheduled.
NCI-RITM0471746	Deploy lexevscts2 to Prod	CTS2 Service promotion to Prod requested 2 weeks ago, elevated 1 week ago.

SYSTEMS

Systems

BACKGROUND:

On Friday Sept 29th, we were asked to deploy a banner on public-facing websites if the government was shutdown. There was confusion about who was reponsible for which pages - and how to do it quickly (especially if systems groups goes to bare-bones support level. While the government was not shut down, we still want the ability to handle it better in the future.

OBJECTIVE:

to be able to update public-facing pages with banners quickly and efficiently, with Consistent styling desired for all sites - in case the need ever arises again (in case of another shutdown/emergency/etc)

ACTION:

Build responsibility list for public facing pages (Jason Lucas compiled the list)

Application	URL	Developer/POC
Term Browser	https://nciterms.nci.nih.gov/	Guidehouse/Kim Ong
Metathesaurus Browser	https://ncim.nci.nih.gov/	Guidehouse/Kim Ong
Term Suggestion Application	https://ncitermform.nci.nih.gov/	Guidehouse/Kim Ong
EVS Explore	https://evsexplore.semantics.cancer.gov	WCI/Brian Carlsen
EVSRESTAPI (Swagger Page)	https://api-evsrest.nci.nih.gov/swagger-ui/index.html	WCI/Brian Carlsen
EVS website	https://evs.nci.nih.gov/	Clint Malone?
Report Exporter	https://evs.cancer.gov/report-exporter	Mayo/Andrew Moore
LexEVS CTS2 docs	https://lexevscts2docs.nci.nih.gov	Mayo/Tracy Safran
LexEVS CTS2 Landing Page	https://lexevscts2.nci.nih.gov/lexevscts2/	Mayo/Tracy Safran
EVS Semantic Integration Platform	https://sip.evs.cancer.gov/evssip/	ESI/Ye Wu

ACTION:

Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on 11 Oct 2023

LEXEVS UPDATES

Monthly Planning and Focus

Hibernate update in LexEVS. Version 5 to 6.
NCItBrowser – ehcache. Merging into master to turn over to QA.
Vulnerability issues updated in CTS2, looking at dependencies in LexEVS related to mybatis-spring.
Will build scope document of Spring/Java changes over the next few weeks

Report Exporter

EVSREPEXP-475- "Apply Digital Styling to Report Exporter" is now on PROD

TADA/DEMO: https://evs.cancer.gov/report-exporter/

Working on templating next

Security

see JQuery issue under Systems

Statistics Dashboard

OBJECTIVE

Met today. They will set Tracy up with Dev access to start planning dashboards.
1. Access requested through service ticket.

Comparison/Mapping Tool

On Hold

AWS Cloud to be in Separate Account

Waiting on AWS team

Team Absences

Mayo Team - Tracy Oct 12,13. Andrew off Oct 27

MSC -

Leidos -

QA -

Gov -

EVS SERVICE AND ARCHITECTURE GROUP UPDATES

EVS Service and Architecture Group

Met today11 Oct 2023

DATA UPDATES

Data

NCIt data on Prod
Monthlies on Stage, need to be reviewed by QA.
Metathesaurus slowed by Systems release schedule.

BROWSER UPDATES

Browser

All covered above.
Kim will keep track of the merges and will review when ready.

QA UPDATES

QA

09d testing completed on ncim and ncit browsers on Prod
RC on Report Exporter being tested on QA.

TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule

Mark Benson TPM Update

Everyone is humbly asked to complete NIH Anti-Harassment training as soon.

Unless your contracting company tells you otherwise - Please check and verify your status on the NIH HHS.gov Learning Portal to confirm completion.
Lyuba and others get lists of people that haven't yet completed - and we can make her life easier if everyone has completed!
Decided: You don't have to report your training status to Mark

LexEVS Technical Debt Progress

Technical Debt Related Update	Estimated Effort	Status
Report Exporter vulnerabilities - design	4 days
Report Exporter vulnerabilities - implementation	5 days
Unit testing	2 days
QA	2 days
Deployment	5 days (elapsed)

Vocabularies Slated for Production

Terminology Updates and Schedule

Vocabulary Name	Local Name	Version	Arrival Date	Loaded to data-qa DB	Date to Stage	Date to Production
Vocabulary Name in LexBIG	Short Name	Version identifier	Date the vocabulary arrived for processing	Has the vocabulary been loaded to the data-qa database?	Approximate date the vocabulary version is scheduled to move to staging	Approximate date the vocabulary version is scheduled to move to production
NCI Thesaurus	NCIt	23.08d	08/28/2023	yes	09/11/23	09/13/23
NCIt-ChEBI	NCIt-ChEBI	AUg2023	08/28/2023	yes	09/11/23	09/13/23
NCIt-HGNC	NCIt-HGNC	Aug2023	08/28/2023	yes	09/11/23	09/13/23
SwissProt	SwissProt	Aug2023	08/28/2023	yes	09/11/23	09/13/23
ChEBI	ChEBI	v225	09/05/23	yes	09/15/23	09/18/23
HGNC	HGNC	Sept2023	09/05/23	yes	09/15/23	09/18/23

QA Schedule and Status

see QA Scheduling and Status

SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version	Percentage Complete	Estimated Completion Date per Iteration	Priority Level	Type Of Testing	Current Tier for Release (DEV, QA, Stage, Prod)	Expected Production Date
EVS REST API (v1.6)	100%	5/27/2022	High	Progression + Regression	QA	6/6/2022
EVS Explore (v1.6)	100%	5/27/2022	High	Progression + Regression	QA	6/6/2022
EVS REST API(v1.6)	100%	6/1/2022	High	Regression	Stage	6/6/2022
EVS Explore(v1.6)	100%	6/2/2022	High	Regression	Stage	6/7/2022
EVS REST API(22.05e) - Monthly Data Deployment	100%	6/1/2022	High	Regression	Stage	6/3/2022
EVS REST API(22.05e) - Monthly Data Deployment	100%	6/3/2022	High	Regression	Production	6/3/2022
EVS REST API(v1.6)	100%	6/6/2022	High	Regression	Production	6/6/2022
EVS Explore(v1.6)	100%	6/7/2022	High	Regression	Production	6/7/2022
NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)	100%	6/3/2022	High	Regression	Stage	6/6/2022
NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)	100%	6/6/2022	High	Regression	Production	6/8/2022
EVS REST API(22.06d) - Monthly Data Deployment	100%	6/30/2022	High	Regression	Stage , Production	6/30/2022
NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment	100%	7/8/2022	High	Smoke	Stage,Production	7/8/2022
NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)	100%	6/3/2022	High	Regression	Stage	6/6/2022
NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment	100%	7/8/2022	High	Smoke	Stage,Production	7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)	100%	7/12/2022	High	Smoke	Stage	7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)	100%	7/13/2022	High	Smoke	Production	7/13/2022
EVS REST API(22.07d) - Monthly Data Deployment	100%	7/27/2022	High	Regression	Stage , Production	7/27/2022
NCIt,NCIm,TermForm(22.07d) - Monthly Data Deployment	100%	8/1/2022	High	Smoke	Stage,Production	8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)	100%	8/3/2022	High	Smoke	Stage,Production	8/3/2022
EVS REST API - 1.6.1 (Hot Fix Deployment)	100 %	8/3/2022	Highest	Progression + Regression	Stage,Production	8/4/2022

Attendees

Name	Role	Present
Remennik, Lyubov	NIH/NCI
Safran, Tracy	NIH/NCI [C]
Ong, Kim L	NIH/NCI [C]
Lucas, Jason R	NIH/NCI [C]
Bauer, Scott	NIH/NCI [C]
Alkis, Barry	NIH/NCI [C]
Solie, Chuck	NIH/NCI [C]
Kondareddy, Swathi	NIH/NCI [C]
Singh, Itendra	NIH/NCI [C]
Zhang, Chao	NIH/NCI [C]
Johnson, Connie	NIH/NCI [C]
Whiteman, Lori	NIH/NCI [C]
Benson, Mark	NIH/NCI [C]
Andrew Moore	NIH/NCI [C]
Snehal Deoruhkar	Mayo

JIRA Issues

Recent EVS Stats Dashboard Related Bugs and Features

Key	Summary	T	Created	Reporter	P	Status

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Recent Report Exporter Related Bugs and Features

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Key	Summary	T	Created	Reporter	P	Status

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Recent LexEVS Related Bugs and Features

Key	Summary	T	Created	Reporter	P	Status

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Recent CTS2 Service Related Issues

Key	Summary	T	Created	Updated	Due	Assignee	Reporter	P	Status	Resolution

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ASSIGNED ACTION ITEMS

Description	Due date	Assignee	Task appears on
Benson, Mark (NIH/NCI) [C] to follow-up with Systems if no meeting is scheduled by 09 Oct 2023 - on this ticket; also note	09 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.25
Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on 11 Oct 2023	11 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.25
Benson, Mark (NIH/NCI) [C] to report on info found out from OCPL on 11 Oct 2023	11 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.25
Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on 11 Oct 2023	11 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.18
Benson, Mark (NIH/NCI) [C] to report on info found out from OCPL on 11 Oct 2023	11 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.18
Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on 11 Oct 2023	11 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.11
Benson, Mark (NIH/NCI) [C] to schedule a mtg/ discuss a possible CSS file/ENV variable for banner message and report on 11 Oct 2023	11 Oct 2023	Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2023.10.04
Benson, Mark (NIH/NCI) [C] to reach out to Clint about https://www.cancer.gov/research/resources/resource/235		Benson, Mark (NIH/NCI) [C]	LexEVS Meeting Minutes - 2024.09.11
Get the Report ready and submitted this week			LexEVS Meeting Minutes - 2024.09.04
Mark to follow up on ticket status/ subproject structure			LexEVS Meeting Minutes - 2024.09.04
Mark to follow up on ticket status/ subproject structure			LexEVS Meeting Minutes - 2024.08.28
Mark to follow up on ticket status/ subproject structure			LexEVS Meeting Minutes - 2024.08.21
Mark to follow up on ticket status/ subproject structure			LexEVS Meeting Minutes - 2024.08.14
Tracy to ping for status			LexEVS Meeting Minutes - 2024.08.14
Tracy to send invite to systems to discuss migration in this meeting			LexEVS Meeting Minutes - 2024.07.17
Temporarily block Singapore traffic			LexEVS Meeting Minutes - 2024.06.05
Tracy to request shut down of instance to save resources			LexEVS Meeting Minutes - 2024.06.05
Temporarily block Singapore traffic			LexEVS Meeting Minutes - 2024.05.29
Tracy to request shut down			LexEVS Meeting Minutes - 2024.05.29
Check status of termform and Tomcat9			LexEVS Meeting Minutes - 2024.05.15

Content

Space Tools

Agenda - Wiki was down for meeting so minutes recorded in Word and pasted in. This has resulted in some formatting changes for this page.

EVS Discussion

NCI-RITM0473138

NCI-RITM0471746

LexEVS Technical Debt Progress

Vocabularies Slated for Production

QA Schedule and Status

Attendees

JIRA Issues

Recent EVS Stats Dashboard Related Bugs and Features

Recent Report Exporter Related Bugs and Features

Recent LexEVS Related Bugs and Features

Recent CTS2 Service Related Issues