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titleAccess to Curation

If you are a logged in curator, Curation is available to review pending data and make it public, and batch generate, re-generate, and delete data availability metrics for samples.  

This chapter introduces you to how to review and make pending data public and how to submit batch processes. Topics in this chapter include:

...

To review the data pending release to the public

  1. Click Curation
  2. On Manage Curation, click Review Data Pending Release to Public.
    The Data Pending Review page displays the list of data to be reviewed.
    Data Pending ReviewImage Added
  3. Next to the item you want to review, click Edit. A detail page opens, Click Edit to open a data detail page where you can update a samplethe item.After
  4. When you are done reviewing the submitted data, you can assign the data to be Public.:
    1. Next to Access to the, click Add. The
    Click Add associated with the Access and the
    1. Access Information panel opens.
    Add Public AccessImage Removed
    1. Add Public AccessImage Added
    2. In the
    Access Information
    1. access information panel, select Public
    and click Save
    1. .
      Add Access to the Public and SaveImage Modified
    2. Click Save
    The item is now publicly-accessible from the caNanoLab public home page.

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Info
titleOwner of the Sample
The owner of a sample can always generate data availability metrics for the individual sample, as described in Generating Data Availability Metrics.


  1. Click Curation
  2. On Manage Curation, click Manage Batch Data Availability.
    The Manage Batch Data Availability page opens.
    The following sample data availability batch options are available.

    Info
    titleProcessing time

    This batch process may take some time, but it runs in the background, so you can perform other options in caNanoLab. 

    OptionDescription
    Generate data availability for all samples   Generates data availability metrics for all samples, including those where metrics were generated previously.
    Regenerate data availability of sample with existing availability  

    Generates data availability metrics only for samples where metrics were generated previously. 

    Delete data availability for all samples

    Removes all the current data availability metrics for all samples.

  3. Click Submit, and a message displays indicating that the process may take some time.. A message appears. For example: "It will take a while to generate data availability metrics for 1753 samples."

    Info
    titleRuns in the background
    The batch generation runs in the background, so you can leave this page and continue using caNanoLab. 

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Anchor
ReviewBatchResults
ReviewBatchResults
Reviewing Batch Results

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  1. You can continue to use caNanoLab while the batch processes.
  2. When the process completes, caNanoLab opens Results with a completion message.
  3. To check on the status of the process you initiated, click the Results menu.
    The Long Running Processes table displays the status of the batch job.

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