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Topics in this appendix include the following:

Subject Annotation Data Configuration

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• Subject annotation Data Source (delimited text)
• Protocol Id (of study to import)

For delimited text, see #DelimitedDelimited-Text Annotation Import. For subject annotation files, one field must be identified as the subject identifier.

See #Annotation Annotation Field Configuration for details on specification of visibility and browse configuration.

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• Whether to import the data
• The visibility of the data, either public or restricted to a set of groups. Low-level genotyping data (raw data and normalized) always has restricted visibility.

See also #Supplemental Supplemental Files Configuration.

Supplemental Files Configuration

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There are two supported formats for these files: #Single Single Sample Format and #Multiple Multiple Sample Format.

Single Sample Format

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• One column must contain the reporter/probe name.
• Each additional columns are the reporter values such that there is one column per sample.

• One multiple sample file for the whole experiment.

  Info
  title Note
  Currently the multiple sample format is slower to load than the single sample format for platforms other than Agilent Copy Number. Future releases should show improvements in this performance.

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Additional annotation for either images or image series can be imported using the delimited-text import functionality.

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