- Documentation Main Page
- Creation of the Cancer Gene Index
- Data, Metadata, and Annotations
- Cancer Gene Index Gene-Disease and Gene-Compound XML Documents
- caBIO APIs
- Cancer Gene Index Shared Parsed Data and Code
- caBIO Portlet Templated Searches
- caBIO Portal
- caBIO iPhone Application
- caBIO Portlet Simple Searches
- Glossary
- Credits and Resources
To Print the Guide
We recommend you print one wiki page of the guide at a time. To do this, click the printer icon at the top right of the page; then from the browser File menu, choose Print. Printing multiple pages at one time is more complex. For instructions, refer to How do I print multiple pages?.
caBIO Portlet Templated Search Overview
caBIO is a resource that integrates biomedical data on genes, proteins, clinical protocols, disease ontologies, pharmacological agents, pathways, and other entities with annotations, controlled vocabularies, and metadata models originating from twenty-three data sources, including the Cancer Gene Index, the Pathway Interaction Database, and the University of California, Santa Cruz Distributed Annotation System.
The Templated Search tool of the caBIO Portlet on the caGrid Portal quickly retrieves all genes that are associated with a particular disease, all of the genes associated with a particular compound, or all of the diseases and compounds that are associated with a particular gene. In addition, you also can evaluate the evidence from which these associations originated and the codes and details that describe these associations. By using the caBIO Object Graph Browser, you may also view other annotations, such as sentence status flags, negation indicators, cell line indicators, and organism name.
Note
Although this tool is continually being improved to make it easier for scientist end users, it is not yet fully-featured. Notations of these limitations are made in each of the step-by-step guides linked below.
Step-by-step Guides
To use the Templated Search tool, follow the step-by-step instructions for using the Templated Search to find