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Document Information

Author:  Craig Stancl, Scott Bauer, Cory Endle
Email: craig.stancl2@nih.govscott.bauer@nih.govcory.endle@nih.gov
Team:  LexEVS
Contract:  16X237
Client:  NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services

Contents of this Page

The purpose of this document is to document the technical face to face meeting details between NCI and Mayo.

Previous Face-to-Face (December 8 - 10, 2015)

November Face-to-Face (November 30 - December 2, 2016)

Meeting Details

NCI Shady Grove Campus
9609 Medical Center Drive
Rockville, MD 20850
http://www.cancer.gov/about-nci/visit

Rooms:

  • 30-Nov-2016 8am - 1pm
    • 4W030
  • 30-Nov-2016 1pm - 5pm
    • 5E030
  • 01-Dec-2016 8am - 5pm
    • 3W030
  • 02-Dec-2016 8am - 3pm
    • 1W030

Conference Details

Phone: 1-866-660-5416, code: 2398515

WebEx:

Day 1

https://cbiit.webex.com/cbiit/j.php?MTID=m3db8722f7a8f234ec028c2f97ecc8b05

Meeting number: 734 001 930

Meeting password: F2F_Day1

Day 2

https://cbiit.webex.com/cbiit/j.php?MTID=m3db8722f7a8f234ec028c2f97ecc8b05

Meeting number: 738 775 914

Meeting password: F2F_Day2

Day3

https://cbiit.webex.com/cbiit/j.php?MTID=m3db8722f7a8f234ec028c2f97ecc8b05

Meeting number: 738 582 780

Meeting password: F2F_Day3

Attendees

NameRoleAttend? (Y/N)

Wright, Larry

NIH/NCI  

 

Fragoso, Gilberto

NIH/NCI    

 

De Coronado, Sherri    

NIH/NCI   

 

Safran, Tracy

NIH/NCI   

 

Ong, Kim L

IS

 

Lucas, Jason R

IS

 

Bauer, Scott  

Mayo

 

Stancl, Craig

Mayo

 

Endle,  Cory

Mayo

 

Wynne, Robert    

NIH/NCI

 

Tran, Tin    

NIH/NCI [C]

 

Carlsen, Brian

(NIH/NCI) [C]

 

Wong, Joanne 

  

Kuntipuram, Kumar

  

Meeting Notes

Agenda

 

  

Wednesday, November 30

  
TimeLocationTopicsParticipantsResources
8:30 AM - 9:00 AM4W030Overview and Planning  
9:00 AM - 10:00 AM4W030

User Group Discussion

  • Team to share how they are using LexEVS and additional usage requirements they may have.
  • What components of LexEVS do you currently use?
    • LexEVS API

    • LexEVS Remote API

    • CTS2 RESTful services

  • Are there LexEVS services that you would like to use, but they don't meet your requirements?

  • Are there any other road blocks preventing you from using LexEVS?

  • What version of LexEVS are you currently using?

CTRP, caDSR, GDC

Cory
10:00 AM - 11:00 AM4W030

RESTful API Discussion

  • Discuss requirements for continued development of REST services. This will include both CTS2 and separate REST-ful API.
  • Browser: Discuss requirements for remote API and CTS2 REST-ful API.
 Scott
11:00 AM - 12:00 PM4W030

Triple store/RDF Discussion

  • Discuss what Triple stores would be used for in parallel with LexEVS
  • Text searching
  • NCBO SPARQL white paper and it's implications
  • Searching on Roles (Gilberto, Kim)
 Scott
Noon - 1:00 PM Lunch  
1:00 PM - 2:00 PM5E030

EVS Project Group Discussion (During regular call-in time)

  • User/content priorities for value set, mapping, and other services.
  • Specialized search and other capabilities for complex chemical names and genetic names.
  • Current capabilities and browser implementation
  • Possible expert system extension
EVS project meetingScott
2:00 PM - 3:00 PM5E030

LexEVS Mapping Discussion

Determine requirements and propose solution for mapping.

  • User requirement: One terminology to many terminologies mapping.
  • Other topics:  Current, conditional, external relationships
 Scott
3:00 PM - 4:30 PM5E030

Lucene Discussion

Propose additional features of Lucene to be used within LexEVS.

  • Discuss specialized search use cases.
  • Possible Lucene enhancements for coding scheme categorizations, auto complete aids, Lucene services.
 Scott/Cory
4:30 PM - 5:00 PM5E030Overflow/Additional Topics  
  

Thursday, December 1

  
TimeLocationTopicsParticipantsResources
8:30 AM - 9:00 AM3W030Overview and Planning  
9:00 AM - 11:00 AM3W030

Value Set management and workflow

  • Discuss requirements for value set version management and workflow management and supporting technology.
  • Rob to give a demo of their current workflow and the scripts they use.
Rob, TracyRob
11:00 AM - 12:00 PM3W030

Value Set and Mapping Data with Hierarchical structure Discussion

  • Determine requirements and propose options to hierarchical structure and mapping.
  • Discuss how VS could retain their multiple hierarchical structure that it came from.
  • Discuss what changes would be needed to CTS2 for this.
 Cory
Noon - 1:00 PM Lunch  
1:00 PM - 3:30 PM3W030

NCI Systems Discussions

  • Nexus Deployment Discussion
    • Current status of LexEVS artifacts on NCI Nexus server
    • Discuss current technical challenges.
  • CI and Docker Status/Roadmap
    • Discuss the current status of the Docker scripts used to build/test LexEVS components.
    • Discuss NCI's current status and future plans to use Docker.
    • Discuss security challenges associated with NCI's environment and Docker.
  • Discuss a separate DEV environment for CI server deployment
  • Tech Stack Upgrades
    • Discuss DB upgrade:
      • MySQL 5.6 vs. MariaDB (10.1 Supported 2017.01)
    • Discuss CentOS 7 upgrade
  • Tier Deployment testing responsibilities
    • Mayo development team responsibilities
    • NCI development team responsibilities

Sara, Shireesha, Phil

 

 

Jacob, Yeon (Systems Team)

Cory
3:30 PM - 4:00 PM3W030

FHIR and terminology services (CTS2)

  • Harold to provide update on CTS2 and FHIR.
HaroldHarold
4:00 PM - 5:00 PM3W030

OWL Restrictions in LexGrid Model

  • Discuss approach and propose additional features.
  • Determine if there are LexEVS model changes needed.
  • Loader considerations.
  • Additional problems and solutions
 Scott
5:00 PM - 5:30 PM3W030Overflow/Additional Topics  
  

Friday, December 2

  
TimeLocationTopicsParticipantsResources
8:30 AM - 9:00 AM1W030Overview and Planning  
9:00 AM - 10:00 AM1W030

LexEVS Admin

Discuss current and future requirements.

  • GUI
    • Consider a web based tool.  A simple way to look at the data.
  • Command Line loader requirements
  • Other considerations
 Cory
10:00 AM - 12:00 PM1W030

Prioritization and Debrief

  • Discuss OWL2, RRF, LexEVS, CTS2, Browser, and all previous topics
    • Discuss future architecture
  • Determine next steps/road map and priorities
 Scott/Cory/Craig
Noon - 1:00 PM Lunch  
1:00 PM - 2:00 PM1W030

Prioritization and Debrief (Continued if needed)

  
2:00 PM - 5:00 PM HOLD for PIV Card Pick-Up  

 

 


 

 

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